Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01536 ATGGCTAATCGGGGTGGAGGGTCGTTTTTACCCTCAAGTAGTACTTCGATTCAAGGTTGGTGTGGAGATGAACTTTATACTGAGCTATGGAAGGTCTCGGCTGGACCTCTTGTGGAAATTCCTCGAGTTAATGACAAGGTTTTATATTTTCCTCAAGGTCATATGGAACAGTTGGAGGCATCTACAAATCAGGAGCTAAATCAGAAACTTCCTTTGTTTAATCTTCCCCCCAAAATTCTTTGTCAAGTAGTTGATACCCGGCTGCTGGCTGAGCAGGATTCAGATGAGGTTTATGCACAGATAACTTTAATGCCAGAAGCTAATCAAGCGCTACCTTCAAGTTTTGAACCTCCACTGATAGAGTGTCGAAAAACAAAAGTCCATTCGTTTTGCAAGGTTTTAACTGCTTCTGATACTAGCACCCATGGAGGGTTCTCCGTGCTTCGGAAACATGCCACAGAATGCCTGCCTCCATTGGATATGACCCAGCAGACCCCAACTCAGGAACTCGTAGCCAAAGATCTTCATGGTTATGAGTGGCGATTCAAGCATATATTTAGGGGTCAACCACGAAGGCATTTGCTGACGACCGGATGGAGCACCTTTGTGACTTCTAAGAGACTGGTTGCTGGAGATTCTTTTGTTTTCTTGAGGGGGGAAAATGGAGAATTACGAGTTGGAGTGAGGCGTCTTGCTCGCCAACAAAGCAGCATGCCTTCTTCTGTCATTTCGAGTCACAGCATGCACTTAGGAGTGCTTGCTACTGCATCTCATGCCGTGTCGACTCAAACTCGCTTTGTTGTCTATTATAAGCCAAGGGCAAGCCAATTTATCGTCAGCTTGAGCAAGTACATGGAAGCGATGAACAATAAGTTCATGGTTGGGATGAGGTTCAAGATGAGGTTTGAAGGGGAGGAGTCTCCTGAGAGAAGGTTTTCGGGTACCATAGTCGGAGTTGATGACATGTCTCCTCACTGGCCCAATTCAGAATGGCGATCACTGAGAGTTCAATGGGATGAACTTGCATCTATTCAGAGACCTGATAGGGTTTCACCATGGGAGATTGAACCTTTCGCTCCTACGTCTCCTAGCATTCCGCACCCTATTTCAGTAAAGAATAAAAGGCCTCGGCCTCCACTTGAAATTCCAGATTCTGATAATTCAACTGTAACAACTCTACGACATCCTGGATCAACATCACATGATGATAGAACACAACTAAGTGTTTCTGCTGCTGAACTTAAAAGATATGAAAATCATGCAACATGGCATTACAAGCAAACAGATGCTGGCGGCAGTGGAAATTCTGTATCAAGGACTGCAATGGAGGGATCTTGGTTAGCATCCTCAAGTGGCTGCGTTTCTCAGCATCGGTTACAGGATTTGACAGATGACCGTAAAAACAGTTCTGTTTGGTCAACGGTCTTTCCAGGACCGCTGGCAGCACACTCAACATGTCCAACTCCACGGTCTTCAAATCCGAAGAGTGACCAAGTACATGACCTTGGGGAAAAGGGGAAGAAAGCTGAGGCGGCTCCAAGCTGCCGGTTGTTTGGGATTGAGCTCATCAATCATTCTAAGAGCTCAGTTCTCCCTGAAAGAGCAGCTGATCAACCAAATAGCACACAGAATAGCACACCAAATGAAATCACTGATGCAGAGCAGAACTCAAACCTGCCAAAGATTTCTAAAGAAAGAAAATTAGGACTTTTACCATTACCTCCTAAAGAGATCCAGCACAAGCAGAACAGCTCGACCAGCAGCCGAAGCCGTACCAAGGTCCAAATGCAGGGGATGGCCGTTGGACGGGCAGTGGATCTTACCACATTGGAGGGTTATGGCCAGCTCATTGATGAATTGGAAAAGATGTTTGATATCAAGGGAGAACTTCATCCTCGTAATAAGTGGGAGATTGTTTTCACCGACGACGAAGGAGATATGATGCTCATGGGCGATTACCCCTGGCAGGAATTCTGTAACATGGTGAGAAGAATATATATGGTCAAGTCAGGATGTGAAGATGGGTTCGGTTAG 2034 45.62 MANRGGGSFLPSSSTSIQGWCGDELYTELWKVSAGPLVEIPRVNDKVLYFPQGHMEQLEASTNQELNQKLPLFNLPPKILCQVVDTRLLAEQDSDEVYAQITLMPEANQALPSSFEPPLIECRKTKVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGENGELRVGVRRLARQQSSMPSSVISSHSMHLGVLATASHAVSTQTRFVVYYKPRASQFIVSLSKYMEAMNNKFMVGMRFKMRFEGEESPERRFSGTIVGVDDMSPHWPNSEWRSLRVQWDELASIQRPDRVSPWEIEPFAPTSPSIPHPISVKNKRPRPPLEIPDSDNSTVTTLRHPGSTSHDDRTQLSVSAAELKRYENHATWHYKQTDAGGSGNSVSRTAMEGSWLASSSGCVSQHRLQDLTDDRKNSSVWSTVFPGPLAAHSTCPTPRSSNPKSDQVHDLGEKGKKAEAAPSCRLFGIELINHSKSSVLPERAADQPNSTQNSTPNEITDAEQNSNLPKISKERKLGLLPLPPKEIQHKQNSSTSSRSRTKVQMQGMAVGRAVDLTTLEGYGQLIDELEKMFDIKGELHPRNKWEIVFTDDEGDMMLMGDYPWQEFCNMVRRIYMVKSGCEDGFG 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21213391 21217670 - MELO3C016272.2.1 Cme07g01536 333552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01536 677 MobiDBLite consensus disorder prediction 533 558 - -
Cme07g01536 677 Gene3D - 291 364 - -
Cme07g01536 677 SMART B3_2 130 232 IPR003340 GO:0003677
Cme07g01536 677 MobiDBLite consensus disorder prediction 354 405 - -
Cme07g01536 677 Pfam Auxin response factor 256 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cme07g01536 677 Pfam B3 DNA binding domain 130 230 IPR003340 GO:0003677
Cme07g01536 677 ProSiteProfiles PB1 domain profile. 589 670 IPR000270 GO:0005515
Cme07g01536 677 MobiDBLite consensus disorder prediction 578 593 - -
Cme07g01536 677 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 670 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cme07g01536 677 Pfam AUX/IAA family 635 670 IPR033389 -
Cme07g01536 677 Pfam AUX/IAA family 576 625 IPR033389 -
Cme07g01536 677 MobiDBLite consensus disorder prediction 384 405 - -
Cme07g01536 677 Gene3D - 127 231 IPR015300 -
Cme07g01536 677 MobiDBLite consensus disorder prediction 481 510 - -
Cme07g01536 677 SUPERFAMILY DNA-binding pseudobarrel domain 115 259 IPR015300 -
Cme07g01536 677 SUPERFAMILY CAD & PB1 domains 583 665 - -
Cme07g01536 677 Gene3D - 584 673 - -
Cme07g01536 677 PANTHER AUXIN RESPONSE FACTOR 9 20 670 - -
Cme07g01536 677 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Cme07g01536 677 MobiDBLite consensus disorder prediction 533 560 - -
Cme07g01536 677 CDD B3_DNA 128 230 IPR003340 GO:0003677
Cme07g01536 677 MobiDBLite consensus disorder prediction 573 593 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00630 Cme-Chr1:5358964 Cme07g01536 Cme-Chr7:21213391 9.42E-177 dispersed
Cme04g01556 Cme-Chr4:22754244 Cme07g01536 Cme-Chr7:21213391 2.38E-37 dispersed
Cme07g01536 Cme-Chr7:21213391 Cme09g01853 Cme-Chr9:22743745 0 dispersed
Cme07g01536 Cme-Chr7:21213391 Cme08g00111 Cme-Chr8:821892 1.35E-120 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41659 PF02309 AUX_IAA 5.80E-06 CL0072 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01536 K14486 - csv:101213942 1290.4