Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01578 ATGGCCGATTCCACCACTGTTGAACTTCCTGTTTCCGGTGCACCGGCCGTACCCACAAAGAAACCAAGAAACAGCCGGAAGGCTTTGAAGGACAAAAACTCTTCACCGGAGGTACCACAATCTCAATCCATGGTTACGAAAGTTACAACACCATCGGAAGGAGAGATCCTCTCTCAGAATCAATCTTCGGCTAAGAAACCGAAATCCAAAGCCGCGGCAAAGAAGCAGCCGGCAAAACAATCCTTTGATAAAGATTTGCAGGAAATGCAGGATATGCTGCAGCAGTTGAAGCTCGATAAGGAGAAGACTGAGGAGCTGTTGAAAGAAAAAGATGAGATGCTTAAACAGAAGGATGAAGAGCTTAAAACGAGAGATAAAGAACAGGAAAAACTCCAGATCGAATTGAAGAAATTGCAGAAGTTGAAGGAGTTCAAACCTACTATGAACTTCCCTATGATTCAAATTTTGAAAGACAAGGAACAAGATAAGAAAGAGAAGAAGAAATGCGCGGAAAAGAAGAGGCCGGCACAACCTTACATCTTATGGTGCAAAGATCAGTGGAACGAGATCAAGAAGGAGAATCCAGAGGCTGATTTCAAGGAAACCTCAAACATTTTGGGGGCTAAATGGAAGACTATTCCAGCAGAGGAGAAGAAGCCATATGAGGAGAAGTACCAAGCTGAAAAAGAAACCTATTTGCGAATCACTTCTAGAGAGAAGCGTGAGAGTGAGGCCATGAAGTTGTTAGAAGAAGAGCAGAAGCAGAAGACGGCTATGGAGCTGCTTGAGCAGTACCTTCAATTCAAAGAGGAAGCAGAGAAGGAGAACAAGAAGAAGAAGAAAGAGAAAGATCCATTGAAGCCAAAACAACCCATGTCTGCATTCTTTCTCTTCTCAAATGAGAGGCGTGCATCTCTTGTTGCTGAAAACAAGAACATCGTTGAGCTAGCGAAGATAGCAGGAGAGGAGTGGAAGAACATGACGGAGGAGCAGAAAGGTCCTTACGAAGAGATGGCAAAGAAGAACAAGGAAAAATACATGCAGGAAATGGAAATTTACAAGCAGAAAAAGGAGGAGGAAGCAGCAATCCTGAAGAAGGAAGAGGAAGAGCAAATGAAGGTCCAGAAACATGAGGCTTTACTATTGCTAAAGAAGAAAGAAAAAACTGAGACTATTATAAAGAAATCGAAGGAGGAGCGCCAGAAGAAGAAGAAGGAAGGGAAAAATCCTGTTGATCCCAACAAGCCTAAGAAGCCTGCATCCTCTTACATCTTGTTCAGTAAAGAAGCAAGGAAAAGTGTAATGGAGGAGAAGCCTGGAGTGAGCAACTCTACAGTGAATGCACTGATATCAGTGAAATGGAAGGAACTAAGTGAAGAGGAGAGAAAAATATGGAATGACAAAGCTGCAGAAGCCATGGAAGCTTACAAGAAGGAAGTAGAGGAATACAACAAAAGTGTTGCTGAAATGAAAGGTGATGATCATGAAGAGAAGAGTTAG 1500 42.67 MADSTTVELPVSGAPAVPTKKPRNSRKALKDKNSSPEVPQSQSMVTKVTTPSEGEILSQNQSSAKKPKSKAAAKKQPAKQSFDKDLQEMQDMLQQLKLDKEKTEELLKEKDEMLKQKDEELKTRDKEQEKLQIELKKLQKLKEFKPTMNFPMIQILKDKEQDKKEKKKCAEKKRPAQPYILWCKDQWNEIKKENPEADFKETSNILGAKWKTIPAEEKKPYEEKYQAEKETYLRITSREKRESEAMKLLEEEQKQKTAMELLEQYLQFKEEAEKENKKKKKEKDPLKPKQPMSAFFLFSNERRASLVAENKNIVELAKIAGEEWKNMTEEQKGPYEEMAKKNKEKYMQEMEIYKQKKEEEAAILKKEEEEQMKVQKHEALLLLKKKEKTETIIKKSKEERQKKKKEGKNPVDPNKPKKPASSYILFSKEARKSVMEEKPGVSNSTVNALISVKWKELSEEERKIWNDKAAEAMEAYKKEVEEYNKSVAEMKGDDHEEKS 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21597180 21599822 - MELO3C016306.2.1 Cme07g01578 333594

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01578 499 MobiDBLite consensus disorder prediction 392 424 - -
Cme07g01578 499 Gene3D High mobility group box domain 271 370 IPR036910 -
Cme07g01578 499 Gene3D High mobility group box domain 395 497 IPR036910 -
Cme07g01578 499 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 416 484 IPR009071 -
Cme07g01578 499 Coils Coil 336 374 - -
Cme07g01578 499 MobiDBLite consensus disorder prediction 1 101 - -
Cme07g01578 499 SUPERFAMILY HMG-box 411 491 IPR036910 -
Cme07g01578 499 Coils Coil 386 406 - -
Cme07g01578 499 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 172 240 IPR009071 -
Cme07g01578 499 Coils Coil 79 141 - -
Cme07g01578 499 Coils Coil 258 282 - -
Cme07g01578 499 MobiDBLite consensus disorder prediction 34 67 - -
Cme07g01578 499 SUPERFAMILY HMG-box 275 361 IPR036910 -
Cme07g01578 499 CDD HMGB-UBF_HMG-box 291 351 - -
Cme07g01578 499 Pfam HMG (high mobility group) box 173 234 IPR009071 -
Cme07g01578 499 Pfam HMG (high mobility group) box 416 484 IPR009071 -
Cme07g01578 499 Pfam HMG (high mobility group) box 288 354 IPR009071 -
Cme07g01578 499 Coils Coil 153 173 - -
Cme07g01578 499 CDD HMG-box 416 481 - -
Cme07g01578 499 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 288 354 IPR009071 -
Cme07g01578 499 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 16 491 IPR044601 GO:0003677
Cme07g01578 499 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 16 491 - -
Cme07g01578 499 CDD HMGB-UBF_HMG-box 174 234 - -
Cme07g01578 499 SUPERFAMILY HMG-box 161 234 IPR036910 -
Cme07g01578 499 Gene3D High mobility group box domain 174 233 IPR036910 -
Cme07g01578 499 MobiDBLite consensus disorder prediction 392 413 - -
Cme07g01578 499 Coils Coil 466 493 - -
Cme07g01578 499 SMART hmgende2 415 485 IPR009071 -
Cme07g01578 499 SMART hmgende2 171 241 IPR009071 -
Cme07g01578 499 SMART hmgende2 287 355 IPR009071 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01578 K09273 UBTF; upstream-binding transcription factor - csv:101204736 691.419
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01578 Cme-Chr7:21597180 Cme08g02590 Cme-Chr8:33309636 2.02E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g113 . . . Bda08g00480 . . . . . . . . . . . Cpe14g00470 . . . . . . . . . . . . . . . . . Cone6ag0841 Cone9ag0838 . . . Cme07g01578 . . . . . . Bma05g00859 . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00644 Chy07g01166 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013737 1 1 1 1 1 0 2 0 0 1 0 0 0 1 1 0 0 2 2 0 1 1 1 1 1 1 1 2 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41662 PF00505 HMG_box 4.30E-17 CL0114 Cme TR