Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01579 ATGTCTACCGATTTCCTAATTAACCGTAATGAGATTCTATTAATGAATTCAATTGCTCGCTCTCTCTCTCTCTCTCTGGGGACTGTATGGATTCTATATCTCTCCGTTGAAACTTTTTATGGGTTTGTGATTTTGAAAGTTCGAGTAGTTCGTTGTCCTAGATGCCAGAATCTCTTGCCTGAACCTTCTGGACTTCCCGTTTATCAGTGTGGTGGATGTGGTATTGTTCTTAAAGCAAAGAGTGAAGTTCTCTTTAATGAGAAAAGGGATTTTGGGAGCAGTGAGAAATATGAGAATTTATCAGAACAAGGAGGTAGCAGCTTAGGTGGTGTTTCCGACTCTGAGTGGGATAGTCCAAGCATGGAGCCAACTGTAAATGAGAGAGTCATGAGGTCCAGAAGGACTGTCTTCAGCAACAGTCCGATTAGAACAAGTGATAGAGAGGATATAGATGACTATGAGAGAAAAATTGGGAAGGAAACTAAGGGAGTTTGGACTATGCAGAGGCTTGGAGATAAAGAAGTTGGTTCGGTTGAAGAACCGCACAGTCAATTTTCAGAACAACGTATCGAAAATTGGGTTCGGCGGTATAATATTGAACAAGACATGAACATTTATGATTATGATTCTCCAAGTACAGCACCTTATCGTAATCCTATTGGAGTAGCAAGAACCCGAGCTACTTTTGAGCATCATAGAGTTGAAAGAGATGCATTCACAGGGTATTCTGGAAACTCTATGGCTGGTGCTCATGGAAAAGGAGCTCCAAATTTCCGCTATTCTAGTGACAGACCTTCAAGTTCTAACTTGGATTTGTTCTATGGCCATCCCGAGCCTAATCGTAACTATGAAGGTCCTATAGAAGGCTTAGACCCAAATCGAGCTGAACTCCTAAGAAAGTTGGATGAGTTGAAAGCCCAAATTATCAAGTCCTGTGATGTGGTAGATAGACCAAGAGTTGTTGCTGATAGAGCTCCAGTTGATCCATATTACGGTCGAGCTGGTTACAATGTCTCAATGCGATCTTCGACAAAGAGCCCACAGCATATCAACAGCCCTCAGTACTTTGGTCGGGGAAGTGGAACCTTTCCAGCAACAGGTCCTCATCAAAGAAATGGTGAGGATTTCTTACATCCTCCGAGGCATGTTGTGAAAGATATGCCATTGTACGAGGATCAGTTTCAGGAGCAAATGGTAAGGAAGACTAACCATCAGCCAGGCCATCAGTATCCTCCACGACAACACTATCCAGAAAGCATAATGGATTTCAAACAAGATCCTCTTTCTCCATCGCATGATGAAGATGTTTTTTTTCACCATCCTGCCTGCTCCTGTTCACAATGCGGCAAAAGGAACAGGCAAGGGCCTCTTCTTCAAGCACCAAATTCTCCTGCAATCAATGTAAGTAATCCGAAAGAGCCAACCAAATCTAGCACGTATCATAATGAAAATCCTGTTACAGTTGGCCTCGTGGCTTCCAATCTGCCACGTGCTGGCCGTTTTCCATCTCAAGATACACTTCCACACTCTAGACAACCTAGCGAGCTTGATTCAGAGATTGATGGTTTTGGTCTTGTTCAACCAAGAACTGCTGCAGTTTTGCAGAGAAATGGAAAATCTCGCGATGCAATCGCTGGCGGTGCTCCATTCATTGTATGTTCTAGTTGCTTGGAGTTGCTGAAACTGCCAAGAAAACTTTACAAGTTGGAGGTGGATTGGCAGAAACTACAGTGTGGTGCTTGTTCGGTTGTCATTATCGTAAAAGTAAAAAACAGAAAGCTTGTTATTAGCGTTCCAGCAGAAACCAAGCCTTCTGAAGTTTCTCCTAATGATGGTTCCCCCCAAAGCGTTGTCGATGCTACGTGCTCCGTAGAAAGTTCTGATAATTCTAGTCACAAAGTGATCGATACCGACCACAACAAACCCTCTGACGACCAGGATTCAGATTGCGCTAAAACACAGGAGGTAACTTCATCTCCCATTTCTTCCAAGGAAAAAGAGTCCCCAACTATTAATTGTGATCCGAAAAATCTCTCGGACTCTGCTGACCTGCCTCCGAAAGATACACCATCTGTAATAAGTACTGTGGAGAATTCTGACAACCCTTCTCATGATAAACCTAGCGAACACAGAGAAGGAAGTGAAAATAAGCAGAAAGTTTTGGTAGATGATGTCACCGAACCAAGTGAGTTAGACGTCTCTTTTGATGATTATTCAAACATTCATGTTTCTCATGATACTGTGGAAATAAACAAAGAAGAAGAAGAAGAAGAAGAAGGAGAAGACGATCAAAACAAGGTCAAAAGCAATCAAGAATCTGAAACCTTCTTTGTGGGTCTCAGTAGAAACAACTTAAGAGATTTTTCAAGATCAAGTGAAATTACGGATAATGGAAGGCCTACTGTTTCGGTTAATGGCCAGCCTTTACCAGCTCATATAGTTAAAAAGGCTGAAAAGCATGCTGGACCCATTCTTCCCGGAGATTATTGGTATGATTACCAAGCTGGATTCTGGGGTGTAATGGGCCATCCATGTCTTGGTATTATTCCTCCATTTATCGACGAGTTCACCTATCCAATGTCGAGGAACTGTGCTGCTGGAAACACTGGAATCTTTGTCAATGGGAGAGAACTTCATAAAAGGGATTTGGAGTTGCTTTCTAGCAGAGGGTTGCCTACTACTACAAATAAATTGTATAGAATCGACATTTCGGGAAGAGTTATAGATGAAGACTCTGGAAAAGAGTTATATAACCTGGGAAAACTCGCCCCAACCATTGAGAAGGTAAAACATGGGTTTGGCATGAAAGTACCAAGAACACTCAAGTGA 2829 42.31 MSTDFLINRNEILLMNSIARSLSLSLGTVWILYLSVETFYGFVILKVRVVRCPRCQNLLPEPSGLPVYQCGGCGIVLKAKSEVLFNEKRDFGSSEKYENLSEQGGSSLGGVSDSEWDSPSMEPTVNERVMRSRRTVFSNSPIRTSDREDIDDYERKIGKETKGVWTMQRLGDKEVGSVEEPHSQFSEQRIENWVRRYNIEQDMNIYDYDSPSTAPYRNPIGVARTRATFEHHRVERDAFTGYSGNSMAGAHGKGAPNFRYSSDRPSSSNLDLFYGHPEPNRNYEGPIEGLDPNRAELLRKLDELKAQIIKSCDVVDRPRVVADRAPVDPYYGRAGYNVSMRSSTKSPQHINSPQYFGRGSGTFPATGPHQRNGEDFLHPPRHVVKDMPLYEDQFQEQMVRKTNHQPGHQYPPRQHYPESIMDFKQDPLSPSHDEDVFFHHPACSCSQCGKRNRQGPLLQAPNSPAINVSNPKEPTKSSTYHNENPVTVGLVASNLPRAGRFPSQDTLPHSRQPSELDSEIDGFGLVQPRTAAVLQRNGKSRDAIAGGAPFIVCSSCLELLKLPRKLYKLEVDWQKLQCGACSVVIIVKVKNRKLVISVPAETKPSEVSPNDGSPQSVVDATCSVESSDNSSHKVIDTDHNKPSDDQDSDCAKTQEVTSSPISSKEKESPTINCDPKNLSDSADLPPKDTPSVISTVENSDNPSHDKPSEHREGSENKQKVLVDDVTEPSELDVSFDDYSNIHVSHDTVEINKEEEEEEEGEDDQNKVKSNQESETFFVGLSRNNLRDFSRSSEITDNGRPTVSVNGQPLPAHIVKKAEKHAGPILPGDYWYDYQAGFWGVMGHPCLGIIPPFIDEFTYPMSRNCAAGNTGIFVNGRELHKRDLELLSSRGLPTTTNKLYRIDISGRVIDEDSGKELYNLGKLAPTIEKVKHGFGMKVPRTLK 942
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21600688 21606271 - MELO3C016307.2.1 Cme07g01579 333595

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01579 942 MobiDBLite consensus disorder prediction 702 722 - -
Cme07g01579 942 Pfam Probable zinc-ribbon domain 545 588 IPR021480 -
Cme07g01579 942 MobiDBLite consensus disorder prediction 97 121 - -
Cme07g01579 942 MobiDBLite consensus disorder prediction 454 483 - -
Cme07g01579 942 MobiDBLite consensus disorder prediction 631 651 - -
Cme07g01579 942 MobiDBLite consensus disorder prediction 652 677 - -
Cme07g01579 942 PANTHER EXTRA-LARGE G-PROTEIN-LIKE 46 939 - -
Cme07g01579 942 PANTHER EXTRA-LARGE G-PROTEIN-LIKE 46 939 IPR040244 GO:1900150
Cme07g01579 942 MobiDBLite consensus disorder prediction 603 630 - -
Cme07g01579 942 MobiDBLite consensus disorder prediction 96 128 - -
Cme07g01579 942 Coils Coil 750 770 - -
Cme07g01579 942 MobiDBLite consensus disorder prediction 601 722 - -
Cme07g01579 942 MobiDBLite consensus disorder prediction 748 773 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01579 - - - cmo:103493111 1913.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00997 Cme-Chr3:18954164 Cme07g01579 Cme-Chr7:21600688 9.44E-09 dispersed
Cme07g01579 Cme-Chr7:21600688 Cme08g00527 Cme-Chr8:3290096 1.38E-10 dispersed
Cme06g00114 Cme-Chr6:720951 Cme07g01579 Cme-Chr7:21600688 2.52E-131 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g110 Blo02g01141 . . . Bpe05g00682 . . . Cmo06g01054 . . . . . . Cpe14g00471 . . . . . . . . Cla07g01414 Cam07g1515 Cec07g1611 Cco07g1571 Clacu07g1503 Cmu07g1473 Cre07g1850 . . Cone6ag0840 Cone9ag0837 . . . Cme07g01579 . . . . . . Bma05g00858 . . . . . Cma16g00555 Car06g00867 . . . . . . . . . . . . . . . . . . Csa04g00643 Chy07g01167 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004376 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 5 1 43