Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01580 ATGACAAAGCACCGGTTCAGGGATTCTATAAAGTCTCTATTTGGGAGTCACCTTGATCCAGAAATAGAACAACGGCTCAAAGGGAGTAAATCAGATGTTGAGGACAAGGTGAATAAAATAAAAAAACTCATAAAAGATGAAGATCTAGGAATAAAAGACCACGACCAATCAGAAAATCGAGGCAAACAGTCCGTTGATGAATTAATTGATGATTTCCTTAAAGATTACCAGGCACTCTATGAACAATACGACAGTTTGGCCGGAGAGTTGAGAAGAAAATTTCAAAAAAGAAGGGAAAAGGAAAGCTCTTCATCTAGCTCATCTGACTCGGATTCAGATGATTCAAATGGTTCTTCAAAGAAAAAGGTCAGTAAAGATGATCGAGGCTTGGAGAAAGGATTCCAAGAAGTTGGTGAAATCAAGAAGGAGCTTGAAGTAGCACTTTCAGAAGTAGCAGACTTGAAAAGGATATTGGCTACTACAATTAAAGAACACGAATCTCTAAATTCAGAACATCTGACAGCTTTAAACAGGATACAAGAAGCAGATAGAATTATTCGAGATTTGAAGGTTGAATCTGAGACTTGGGATGCTCAGAAGTCTAAATTTCAGCTTGAAATTGAAGAACTGAATCTGAGACTGAGTAATGCGGGTAAGATTGAAGCTGAGTTGAACGAGAGATTAAATGGTATGGAAACAGAGAGGAATAGTTTCATTGAAGAAAATGAGACTGCAAGGAGGAGGATTGAAGAGGGGGGAAAAACTATAGAGGAATTAAAGACTTTGGCTGATCAGTTGAGGGAGAAGTTGTCAGCCACAATGGAAGAAAAGGAGACTCTAAACTTAAAACACTTGGAAGCGCTAAACAATATACAAGAAGTAGAAAAGGTCACAGGAAACCTGAGGGCTGAGGTTGAAGCATTGGGTCTTGAAAAATCTAAATTTCTAGTCGATATTGAAGACCTGAGTCAGAAATTGAGTGCTGCTGGCGAAATTCAATCTGAATTGAAGGGGAGACTTAAAGATATTGAAATAGAGAAGGAAACGTTGACCGAGGAGAAGGAGACTGCATGGAGGAAAATTGAGGCGGGGGATAAAATTGTAGAAGAATTAAATGCCACAATTGATTCTTTGAAGAGGCAGTTAACAACTACAATTGAAGAAAAGGAAGCTCTGAACTTCCAGCACTTGGAAACTTTAAGTAGGGCACAAGAAGCAGATACTATTACAAGAGATCTGAGGGTCGAATCAGAGACCTGGAGTGTTGAAAAATCTAAATTACTCCTTGAGATTGAAGATCTGAATCAGAAGTTGGATGCTGCTGGAAAATTGGAAGCACAATTGAATGAGAAATTGAAAGTTGTTGGAATTGAATATGATAACTTGATCAAGGAAAATGAAGCTGCAAATAGGACGATTGAAGAAGGACAGAAAATTATAGAAGAACTGAATATCATTACTGATCAGGTTAAGAGGCAGTTGGCAGCTACGATTGAAGAAAAGGAAGTTCTGAACTTGGATCATGCGACAGCTTTAAGCAAGATTACTGAGGCTGATCAGATTATAGGAGATATGAAGACACAATCTGAAACATGGGCCGTCGAAAAAACTGATCTTCTTTGCATGATTGAAGAGATGAATCAAAGAATAAGCGATGCTATTAAGATAGAAGCAGAACTCCGTGGAAAATTGAAAGATATTGAAATTGAGAGAGATGGGTTGATCAAGGAAAAGGAGATTGCATGGAAGGAGATTGAACAAGGTAAACAAGTTAGAGAAGAATTAAATGCCACGATTGATCAACTGAACAGTCAATTGACAATTACAGTAGAAGAAAAGAAAGCTCTCAGCTTAGAACATGTGATGACCTTAAGTAAGCTTCAAGAAGCAAATAAAATCATAGAAGATTTTAAAGTTGACGCAGATAGTTGGGACGTGGAAAAATCTAAGCTGTTACTTCAAGTTGAAGGGTTGAATCAGAGACTGAGCCATGCTTCTAAGTTAGAAACAGAACTTAATGAAAGATTGAACATTGTGGAAATTGAGAAAGTCAACTTGATAAAAGAAAGGGAAATTGCTTGGAAGAGGATTGAAGAGGGAGAGAAGATTATAAAGGATTTAAGTGAGATTGGTGATCAGCTAAAAGAGGAAAAGATTACCATTTCCCAAGAATTGGAAACACTTCGAGGAGAAGGTTCTTTCTTGAAGCAGCAAATTCAGTCTACTGAACAGCAGGCTGCAAAATTAATGCATTCTCTAGAAACATCTGAGGGAGAAAATAGATTATTGAACTTGAAAATTGTAGAGATCTCGAGTGAGATTCAATTGGCTCAACAGAAAAACCAAGAACTTGTGTCTCAGTTGCAACTGTTGAAGGAAGATTTGGGCGTGAGGGAAACAGAACGTACTACTCTTGTTGAGAAGCACGAGGCACATGTGAATGAATCATTAACTCGCGTAAATATGCTAGAAGCTCAAGTTACACGGTTGGAAACAGAACTGGAGTTATTGCAATCACGTGAGAAAGATTTGTCTCAAGAATTGGAGATAAAAACAGCTGAAGCAAAACAATTGGGAGAGGAAAATATTGGATTACAAGCCCAAGTTTCAGAGATTGAAATATTATTTAGGGAGAGAGAAAATGAACTTTCAATTCTTAGAAAGAAACTTGAAGACAGCGAGAATCGATCATCATCTAACACAGCAAATTTGACTCTGGAGATCAACCGCTTACTAGAAGAGATTAATTCTTTACATTCTCAAAAAGGTGAACTAGAAGAGCGGATGATATGCAGTAATGAAGAAGCTTCATTGCAAGTCAAGGGCCTGGCAGATCAGGTGGATACATTGCAGCAACAGTTGGAAGTCCAACAGAGCCAAAAAATTGAATTGGAGTTGCAACTTGAGAGGACAACTCAGACGATTTCAGAATATACAATACAGATACAAAAGTTTAAGGAGGAATTAGAAGACAAGATTTCGGATGTACAGAGATTAGTGAAAGAGAAAGAAGATTTAATAGTGCGAATCAAGGATCTTGAATCAGCATTTGACTCCTTATGCAATGAAAAGCACGAACTTGAGGAGAAACTTAAAAGTCAGATGGATGAGAATAGTCAACTACGGGAGGAAAAGTTTGATCTGGAGAAGAAATTTTTTGAATTAGAAAGTAACTTGACAGATAGAGGAGTTGAGCTTGCTACTCTCCATGAGAGACAAAGAAATGGAGAAGCTGAAGCCTCAAGCCAAAAACTAATCTTAGTGGCTCAGGTTGAAACTCTGCAAGAGAAGTTGAATTCTTTGCAGAATGAAAAAAGTGAATTTGAGTTGCGGGTTGAAAAGGAGAAACAAGAACTCTTGGATACCTTAACTCAACTGGAAAAGGAGAAAGTTGAGTTATTGAGTTCAATTGGTGATCATCAAAGAAATTTGAAGGAACACGAGGATGCATATGAAAAGCTAAATGATGAGTATAAACTGCTTGAAGATCAGTTTCAAGAATGTAAGCTAAAGCTTGATAATGCAGAAGTGAAGATGGCAGTAATGGCCCAAGAATTTCATAATGACATCAGATCAAAGGACCTAGTGAAAGATGACCTGGAGCTAATGGCTGAAGATCTGAAAAGAGACCTGGAAGTAAAAAATGATGAGATAAATAGCCTGGTTGAAAATGTTCGCACAATTGAGGTCAAGCTCCGGTTATCAAACCAAAAGCTTCGTGTTACAGAACAATTATTAACTGAAAAGGAAGAGATATTTCGAAAAGCTGAATTGAAGTATCTAGAGCAACAGAGACTGCTTGAAGAACAAATTCATGGACTTTCTGCAACGATTGTTGCCAACAATGAAGCGCACCAAAGGGCGATATCTACTGTTTCAGAAAACATTAACAGTAACCTCTCCCAACTGGAATGTGTGATCAGGAAGTTCATATCGGACTATGCAAAGTATGAGAAGTGTGTCATTGAGACATCCCACGATCTACAGCTTGCAAAGAGTTGGGTCTCAAAAGCTATTCAAGAAACAGAAGGCCTAAAAAAAGAGGTGGCAAACCTTGGCAAACAACTTCAAGATAAGAAAGAAAGAGAATCAATACTTGTAGAACAAGTTGAGAAATTGGAGACTAAGGTCAACAAGGAAGGATCTGAGAAGGATGGATTGGTTCAAGCAATCCACCAACTTGAAAAGAGACAGAGAGAACTAGAGAAGATGATGGAAGAGAAGAATGAAGGTATGCTGGGCCTGAAAGAGGAGAAAAAAGAAGCGATAAGGCAACTTTGCATGTTGATCGAGTATCACCGTAACCGCTATGATTTTCTCAAAGATGAGGTCTTGAAGCTGAATGTTAAAGGAGGCCAGAGTGTAAGATAG 4371 38.07 MTKHRFRDSIKSLFGSHLDPEIEQRLKGSKSDVEDKVNKIKKLIKDEDLGIKDHDQSENRGKQSVDELIDDFLKDYQALYEQYDSLAGELRRKFQKRREKESSSSSSSDSDSDDSNGSSKKKVSKDDRGLEKGFQEVGEIKKELEVALSEVADLKRILATTIKEHESLNSEHLTALNRIQEADRIIRDLKVESETWDAQKSKFQLEIEELNLRLSNAGKIEAELNERLNGMETERNSFIEENETARRRIEEGGKTIEELKTLADQLREKLSATMEEKETLNLKHLEALNNIQEVEKVTGNLRAEVEALGLEKSKFLVDIEDLSQKLSAAGEIQSELKGRLKDIEIEKETLTEEKETAWRKIEAGDKIVEELNATIDSLKRQLTTTIEEKEALNFQHLETLSRAQEADTITRDLRVESETWSVEKSKLLLEIEDLNQKLDAAGKLEAQLNEKLKVVGIEYDNLIKENEAANRTIEEGQKIIEELNIITDQVKRQLAATIEEKEVLNLDHATALSKITEADQIIGDMKTQSETWAVEKTDLLCMIEEMNQRISDAIKIEAELRGKLKDIEIERDGLIKEKEIAWKEIEQGKQVREELNATIDQLNSQLTITVEEKKALSLEHVMTLSKLQEANKIIEDFKVDADSWDVEKSKLLLQVEGLNQRLSHASKLETELNERLNIVEIEKVNLIKEREIAWKRIEEGEKIIKDLSEIGDQLKEEKITISQELETLRGEGSFLKQQIQSTEQQAAKLMHSLETSEGENRLLNLKIVEISSEIQLAQQKNQELVSQLQLLKEDLGVRETERTTLVEKHEAHVNESLTRVNMLEAQVTRLETELELLQSREKDLSQELEIKTAEAKQLGEENIGLQAQVSEIEILFRERENELSILRKKLEDSENRSSSNTANLTLEINRLLEEINSLHSQKGELEERMICSNEEASLQVKGLADQVDTLQQQLEVQQSQKIELELQLERTTQTISEYTIQIQKFKEELEDKISDVQRLVKEKEDLIVRIKDLESAFDSLCNEKHELEEKLKSQMDENSQLREEKFDLEKKFFELESNLTDRGVELATLHERQRNGEAEASSQKLILVAQVETLQEKLNSLQNEKSEFELRVEKEKQELLDTLTQLEKEKVELLSSIGDHQRNLKEHEDAYEKLNDEYKLLEDQFQECKLKLDNAEVKMAVMAQEFHNDIRSKDLVKDDLELMAEDLKRDLEVKNDEINSLVENVRTIEVKLRLSNQKLRVTEQLLTEKEEIFRKAELKYLEQQRLLEEQIHGLSATIVANNEAHQRAISTVSENINSNLSQLECVIRKFISDYAKYEKCVIETSHDLQLAKSWVSKAIQETEGLKKEVANLGKQLQDKKERESILVEQVEKLETKVNKEGSEKDGLVQAIHQLEKRQRELEKMMEEKNEGMLGLKEEKKEAIRQLCMLIEYHRNRYDFLKDEVLKLNVKGGQSVR 1456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21606326 21614671 - MELO3C016308.2.1 Cme07g01580 333596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01580 1456 Coils Coil 901 928 - -
Cme07g01580 1456 Coils Coil 697 717 - -
Cme07g01580 1456 Coils Coil 1342 1376 - -
Cme07g01580 1456 Coils Coil 1197 1224 - -
Cme07g01580 1456 Coils Coil 813 861 - -
Cme07g01580 1456 Coils Coil 933 1058 - -
Cme07g01580 1456 PANTHER COP1-INTERACTIVE PROTEIN 1 266 380 - -
Cme07g01580 1456 PANTHER COP1-INTERACTIVE PROTEIN 1 1 268 - -
Cme07g01580 1456 PANTHER COP1-INTERACTIVE PROTEIN 1 593 1454 - -
Cme07g01580 1456 PANTHER COP1-INTERACTIVE PROTEIN 1 372 492 - -
Cme07g01580 1456 PANTHER COP1-INTERACTIVE PROTEIN 1 489 604 - -
Cme07g01580 1456 Coils Coil 725 759 - -
Cme07g01580 1456 Coils Coil 424 451 - -
Cme07g01580 1456 MobiDBLite consensus disorder prediction 114 128 - -
Cme07g01580 1456 PANTHER COP1-INTERACTIVE PROTEIN 1 372 492 - -
Cme07g01580 1456 PANTHER COP1-INTERACTIVE PROTEIN 1 266 380 - -
Cme07g01580 1456 PANTHER COP1-INTERACTIVE PROTEIN 1 1 268 - -
Cme07g01580 1456 PANTHER COP1-INTERACTIVE PROTEIN 1 593 1454 - -
Cme07g01580 1456 PANTHER COP1-INTERACTIVE PROTEIN 1 489 604 - -
Cme07g01580 1456 MobiDBLite consensus disorder prediction 97 128 - -
Cme07g01580 1456 Coils Coil 1384 1425 - -
Cme07g01580 1456 Pfam KIP1-like protein 14 84 IPR011684 GO:0003779
Cme07g01580 1456 Coils Coil 73 93 - -
Cme07g01580 1456 Coils Coil 459 479 - -
Cme07g01580 1456 Coils Coil 361 395 - -
Cme07g01580 1456 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 10 90 IPR011684 GO:0003779
Cme07g01580 1456 Coils Coil 557 577 - -
Cme07g01580 1456 Coils Coil 767 794 - -
Cme07g01580 1456 Coils Coil 207 283 - -
Cme07g01580 1456 Coils Coil 333 353 - -
Cme07g01580 1456 Coils Coil 876 896 - -
Cme07g01580 1456 Coils Coil 585 619 - -
Cme07g01580 1456 Coils Coil 1084 1178 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01580 - - - csv:101204981 2545.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01580 Cme-Chr7:21606326 Cme07g01581 Cme-Chr7:21618820 7.01E-52 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g108 . . Bda06g00139 Bda08g00482 . Bpe07g00078 . . . Cmo16g00608 . . . . . Cpe14g00472 . . . . . . . . Cla07g01412 Cam07g1514 Cec07g1610 Cco07g1570 Clacu07g1502 Cmu07g1472 Cre07g1849 . . Cone6ag0838 . . . . Cme07g01580 . . . . . . Bma05g00855 Bma12g00049 . . . . Cma16g00559 . . . . . . . . . . . . . . . . . . . Csa04g00641 Chy07g01168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001955 2 3 1 4 1 2 2 2 2 2 1 2 3 2 2 3 2 3 2 2 2 2 2 2 2 2 2 5 3 1 66