Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01587 ATGGATCATTCTGGGGAAGCCAGTAACCAGAAACCAGCAGTTGAAGTTGCCAAAGACAAGAATGGTGTAGAACAAGTGCTGCTTCGGAACTCTCGAGGAGCTTCAGCAAGGGTTAGCTTGCATGGAGGCCAAGTTCTGTCTTGGAAAACTGAAAAAGGTGAAGAATTATTGTTTACCAGTTCTAAGGCAATTTTTAAGCCACCAAAAGCTGTGAGAGGAGGAATTCCAATTTGTTTTCCGCAGTTTGGGGCTCGTGGAAACCTTGAGGAGCACGGGTTTGCTCGTAACAAGATTTGGAAAATCGATGATAATCCTCCTCCTCTTAATCGAGGTGAAATCAAGGACAAATCCTGCATCGATTTGCTTCTTAAACCTTCTGAAGATGATCTGAAAATATGGCCACATAGACTGAAGGTCTGTTTGGCAGCAGATGGGAATCTCATATTAATATCACGAATTCGGAATATCAATTGCAAGCCTTTCAGTTTCTCAATTGCATTCCACACATATTTCTCCATTTCTGATATCAGTGAAGTAAGAGTTGAGGGGCTTGAGGTTCTCGACTATCTCGACAACTTACATGATAAACAACGTTTCACTGAGCAAGGAGATGCCTTAACATTTGAATCAGAGATTGATCGAGTTTATCTTAGTTCTTCAGATCTCATCGCGGTGCTTGATCATGAGCGAAAGCGCACTTTTGTTGTGAGAAAGGAAGGACTTCCAGATGTTGTGGTGTGGAATCCATGGGAGAAGAAAGCAAAATCGATTGTCGATCTCGGGGATGAAGATTACAAACAGATGCTTTGTGTTGATGGAGCTGCAATTGAGAAACCTATTACCTTGAAACCAGGTGAGGAATGGACTGGCCGCTTAGAACTATCCGTCATCCCCTCAAGTTAA 903 42.64 MDHSGEASNQKPAVEVAKDKNGVEQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTSSKAIFKPPKAVRGGIPICFPQFGARGNLEEHGFARNKIWKIDDNPPPLNRGEIKDKSCIDLLLKPSEDDLKIWPHRLKVCLAADGNLILISRIRNINCKPFSFSIAFHTYFSISDISEVRVEGLEVLDYLDNLHDKQRFTEQGDALTFESEIDRVYLSSSDLIAVLDHERKRTFVVRKEGLPDVVVWNPWEKKAKSIVDLGDEDYKQMLCVDGAAIEKPITLKPGEEWTGRLELSVIPSS 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21688472 21692905 - MELO3C016314.2.1 Cme07g01587 333603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01587 300 Pfam Aldose 1-epimerase 25 294 IPR008183 GO:0005975|GO:0016853
Cme07g01587 300 PIRSF PHexose_mutarotase 1 299 IPR025532 -
Cme07g01587 300 PANTHER APOSPORY-ASSOCIATED PROTEIN C-RELATED 5 300 - -
Cme07g01587 300 SUPERFAMILY Galactose mutarotase-like 19 294 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cme07g01587 300 PANTHER GLUCOSE-6-PHOSPHATE 1-EPIMERASE 5 300 - -
Cme07g01587 300 CDD D-hex-6-P-epi_like 26 295 IPR025532 -
Cme07g01587 300 Gene3D - 18 297 IPR014718 GO:0030246
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01587 K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15] - csv:101205699 587.415
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01337 Cme-Chr5:22306316 Cme07g01587 Cme-Chr7:21688472 5.43E-148 dispersed
Cme07g01587 Cme-Chr7:21688472 Cme07g01650 Cme-Chr7:22216344 7.14E-36 dispersed
Cme06g00125 Cme-Chr6:795634 Cme07g01587 Cme-Chr7:21688472 6.22E-159 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g97 Blo02g01136 . . Bda08g00488 Bpe05g00676 . . . . Cmo16g00612 . . . . . Cpe14g00477 . . . . . . . . Cla07g01406 Cam07g1507 Cec07g1604 Cco07g1561 Clacu07g1497 Cmu07g1467 Cre07g1843 . . . . . . . Cme07g01587 . . . . . . Bma05g00849 . . . . Cma06g01035 Cma16g00563 . . . . . . . . . . . . . . . . . . . Csa04g00635 Chy07g01178 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000273 4 7 4 5 2 4 5 4 4 4 4 4 6 4 5 6 4 8 6 4 4 4 4 4 4 4 4 15 8 4 149