Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01607 ATGGAGCAGAAGGGTTTGTTGCTGTCGGCGTTGAGTGTGGGAGTCGGAGTAGGGGTAGGGCTGGGACTAGCCACCGGACAAAGCGTGAAGCAATGGTCCGCCTCTAATTCTTCATCAAATCTAATCACCGCCGATAAATTGGAACAAGAAATGCTTAAACACATTGTTGATGGCCGTGAAAGCAAAGTCACTTTTGATGATTTCCCTTATTATCTCAGTGAACAAACACGAGTCCTATTGACAAGTGCTGCATATGTGCATTTGAAACATGCTGAAGTTTCTAAGTTCACTCGAAACCTTTCTCCAGCGAGTCGAGCCATCTTACTCTCCGGACCTGCTGAACTCTACCAACAAATGCTTGCCAAGGCATTGGCTCACTATTTTGAGGCTAAACTGTTGCTCTTAGATATAACTGACTTTTCCCTAAAGATTCAGAGCAAATATGGTACTTCAGTCAAGGAATCTGTCTACTTCAGAGTCAACATTGGAGAGATTGTCTGGCTTATTTGGATCATTTTCAATCCTTCCATCCAGGGAAGAACAAAAAATAGGGGAAACGAAGGATCTTCCAATCTTCCAAAACTTCGACGAAATGCCTCAGCTGCTGCTAACATTAATAACCTTGCTTCACAATGTAATGTTGACAAACCAGCTTCCCTTAAGCACATGAGCAGCTGGGCTTTTGAGGAGAAACTTCTTATACAATCTTTGTATAAGGTTCTTCTTTATGTGTCGAAAGCAAATCCCATTGTTTTATATCTTCGTGACGTAGATAGGTTTTTATCCAAGTCAAATAGGGTGTATAACTTGTTCCATAAAATGCTACAAAAATTGTCTGGATCAATTTTGATTCTTGGTTCCCGTACTATCAATTCGAGCAATGATTATATGGAGGTGGATGAGAGGCTCTCTGCTCTTTTTCCTTATAATATCGAGATTAGGCCACCTGAAGATGAATCTCATCATGTCAGTTGGAAGTCTCAATTGGAAGAGGATATGAAGTCGATCAAGGTTCAGGATAACCGAAACCATATCATGGAAGTTCTTTCAGATAATGATCTGGACTGCGATGATCTCGACTCGATCTGTGTTGGTGATACCTTGGCTCTCAGTAACTACATAGAAGAGATTGTGGTGTCTGCAATTTCTTATCATCTAATGAACAACAAGGACCCTGAATACAGAAACGGAAAACTGATTATTTCAAGCAAGAGTTTGTCCCATGGACTGAGCATATTCCAGGCAGGAAAATCCACTATCAAAAATAGTGTACAGCTTGAAGCACAAGCTGAAGCTTCAAAGGACTCAGGAGCAGTGAAATCCGAAGCAAAAGCTGATACCGCAGCTGCTGAAATCAGAAGTGAAACAGCACCTGTAGCTGCTGCGAAAACCGATGGAGAGATGGCTGCTCCAGCTGTAAAAGCCCCAGAAGTTCCACCAGATAATGAGTTTGAGAAACGCATTAGGCCAGAGGTCATACCGGCGAATGAGATTGGTGTTACATTTTCTGATATTGGTGCGATGGAGGAAATAAAAGATTCTCTTCAAGAACTAGTAATGCTTCCTCTTCGAAGGCCAGATTTATTTCTTGGAGGGCTTTTGAAGCCTTGCAGAGGCATATTGTTGTTTGGACCTCCTGGAACAGGAAAGACTATGTTAGCTAAGGCCATAGCAAAAGAAGCCGGAGCAAGCTTCATTAATGTTTCGATGTCTACCATAACTTCCAAATGGTTTGGCGAAGACGAGAAGAATGTTCGGGCTTTATTCACACTGGCAGCTAAAGTCTCTCCCACCATCATATTTGTAGATGAGGTAGATAGTATGCTCGGGCAGCGAACAAGAGTCGGTGAGCATGAGGCAATGAGGAAGATAAAGAATGAGTTCATGACTCATTGGGATGGACTCTTGACGAAGCCAGGGGAGCGTGTACTTGTTCTTGCAGCAACGAATAGGCCATTTGACCTCGATGAGGCCATCATACGGCGTTTTGAGAGAAGAATAATGGTGGGTTTACCATCAGCAGAAAATAGAGAAATGATATTGACAACTCTCTTGGGGAAAGAAAAGGTGGAAGAAGGGCTAGACATGAAGGAGCTGGCCACAATGACAGAAGGATATAGTGGAAGTGATCTCAAGAACTTCTGTATGACGGCTGCATATCGACCTGTTCGAGAACTAATACAGCAAGAAAGACTAAAGGATGTGATTCAGGACAAATGTAACCCCTTACTCCGTTTCATTGTCCGTTTTCTTGCATTGAAGGAGAAAAAACGAAGAGCTGCCGAAGGACAGAATAAGACAGGGGATGGAGCTGGAGAAAGCAAAGAAGAAAGAGTAATCACCCTCAGGGCACTAAATATTGAGGATTTCAGACTAGCAAAGAATCAGGTTGCAGCAAGTTTTGCAGCAGAAGGAGCAATGATGAGTGAATTGAAACAATGGAATGAGTTATATGGGGAAGGAGGATCTAGAAAGAAGCAACAGTTAACTTATTTCCTGTGA 2502 42.53 MEQKGLLLSALSVGVGVGVGLGLATGQSVKQWSASNSSSNLITADKLEQEMLKHIVDGRESKVTFDDFPYYLSEQTRVLLTSAAYVHLKHAEVSKFTRNLSPASRAILLSGPAELYQQMLAKALAHYFEAKLLLLDITDFSLKIQSKYGTSVKESVYFRVNIGEIVWLIWIIFNPSIQGRTKNRGNEGSSNLPKLRRNASAAANINNLASQCNVDKPASLKHMSSWAFEEKLLIQSLYKVLLYVSKANPIVLYLRDVDRFLSKSNRVYNLFHKMLQKLSGSILILGSRTINSSNDYMEVDERLSALFPYNIEIRPPEDESHHVSWKSQLEEDMKSIKVQDNRNHIMEVLSDNDLDCDDLDSICVGDTLALSNYIEEIVVSAISYHLMNNKDPEYRNGKLIISSKSLSHGLSIFQAGKSTIKNSVQLEAQAEASKDSGAVKSEAKADTAAAEIRSETAPVAAAKTDGEMAAPAVKAPEVPPDNEFEKRIRPEVIPANEIGVTFSDIGAMEEIKDSLQELVMLPLRRPDLFLGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKPGERVLVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILTTLLGKEKVEEGLDMKELATMTEGYSGSDLKNFCMTAAYRPVRELIQQERLKDVIQDKCNPLLRFIVRFLALKEKKRRAAEGQNKTGDGAGESKEERVITLRALNIEDFRLAKNQVAASFAAEGAMMSELKQWNELYGEGGSRKKQQLTYFL 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21860264 21866335 + MELO3C016331.2.1 Cme07g01607 333623

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01607 833 SMART AAA_5 536 673 IPR003593 -
Cme07g01607 833 Gene3D - 36 335 IPR027417 -
Cme07g01607 833 Pfam ATPase family associated with various cellular activities (AAA) 540 670 IPR003959 GO:0005524|GO:0016887
Cme07g01607 833 CDD AAA 506 671 - -
Cme07g01607 833 Pfam AAA+ lid domain 694 734 IPR041569 -
Cme07g01607 833 Gene3D - 672 735 - -
Cme07g01607 833 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 332 IPR027417 -
Cme07g01607 833 ProSitePatterns AAA-protein family signature. 643 662 IPR003960 GO:0005524|GO:0016887
Cme07g01607 833 Gene3D - 499 671 IPR027417 -
Cme07g01607 833 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 833 - -
Cme07g01607 833 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 833 - -
Cme07g01607 833 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 500 744 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01607 - - - csv:101213686 1406.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01607 Cme-Chr7:21860264 Cme06g00240 Cme-Chr6:1437222 2.88E-65 dispersed
Cme01g02297 Cme-Chr1:31478624 Cme07g01607 Cme-Chr7:21860264 1.82E-12 transposed
Cme01g02411 Cme-Chr1:32409336 Cme07g01607 Cme-Chr7:21860264 1.16E-09 transposed
Cme01g02650 Cme-Chr1:33986579 Cme07g01607 Cme-Chr7:21860264 1.10E-57 transposed
Cme06g01170 Cme-Chr6:9097548 Cme07g01607 Cme-Chr7:21860264 1.33E-84 transposed
Cme09g01996 Cme-Chr9:23758707 Cme07g01607 Cme-Chr7:21860264 2.33E-85 transposed
Cme12g01595 Cme-Chr12:23233652 Cme07g01607 Cme-Chr7:21860264 3.56E-24 transposed
Cme07g01607 Cme-Chr7:21860264 Cme09g01945 Cme-Chr9:23442393 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g63 Blo02g01127 . . Bda08g00498 Bpe05g00666 . . . . Cmo16g00624 . . . . . Cpe14g00486 Cpe05g00632 . . . . . . . Cla07g00737 Cam07g0790 Cec07g0855 Cco07g0825 Clacu07g0771 Cmu07g0780 Cre07g1131 . . Cone6ag0820 Cone9ag0819 . . . Cme07g01607 . . . . . . Bma05g00841 . . Cmo02g01109 . . Cma16g00575 . . . . . . . . . . . . . . . . . . . Csa04g00619 Chy07g01193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75