Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01610 ATGCTCTTCTTCAAATCTTTATCCCGAGCAGTGCACCAAGAATCCCAGTCCCCGGAGGAGCTCAAGGAAACCGGCGCCGTTTCCGGCTCACCTGTCTCACTGACGGTGTGGAGGAAGTCACTCCTACTCACATGCAACGGCTTCACAGTGATCGATCGTAACGGAAACATCGTATACAGAGTCGACAATTACACCGGACGACCAGAGGAAATGATTCTGATGGACGGCCTCGGAAAATCCGTCCTCACAATGTGCCGCTCCAAGAAGCTAGGATTAGGGGAAAACTGGTGCGTATACGAAGGGGAAGTAGAAGGAAAAACAAGGGGAAGAAAGAACAAACCGATATGTCGAGTGAAGAAGAACATAAACATACTACATGTGGATCCGAACGCGAAAGTACTAGCGTATGTATACGATTACAGAATCTCGAAGAAAAAGTACGCGTATAGTGTGGAAGGTTCATACGGGGAGCGATCGTGCAAGGTATTGGATGCTGCGTCGAGGAGGGTGGTGGCGGAGGTGAAGAGGAAGGAGGCGGTGAAGGGTGGAGTTGGTTTTGGGGCGGAGGTATTTCTTCTGGTGATTGTTCCTGGTTTTGATTCAGGATTAGCGATGGCTTTGGTTTTGCTTTTGGATCAAATGTTCTCTTAG 651 49.0 MLFFKSLSRAVHQESQSPEELKETGAVSGSPVSLTVWRKSLLLTCNGFTVIDRNGNIVYRVDNYTGRPEEMILMDGLGKSVLTMCRSKKLGLGENWCVYEGEVEGKTRGRKNKPICRVKKNINILHVDPNAKVLAYVYDYRISKKKYAYSVEGSYGERSCKVLDAASRRVVAEVKRKEAVKGGVGFGAEVFLLVIVPGFDSGLAMALVLLLDQMFS 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21898295 21899523 + MELO3C016334.2.1 Cme07g01610 333626

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01610 216 Pfam LURP-one-related 27 209 IPR007612 -
Cme07g01610 216 SUPERFAMILY Tubby C-terminal domain-like 27 215 IPR025659 -
Cme07g01610 216 Gene3D - 26 216 IPR038595 -
Cme07g01610 216 PANTHER - 13 215 IPR007612 -
Cme07g01610 216 PANTHER PROTEIN LURP-ONE-RELATED 17 13 215 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01610 - - - csv:101213452 390.578
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02798 Cme-Chr4:33039504 Cme07g01610 Cme-Chr7:21898295 7.22E-45 dispersed
Cme07g01610 Cme-Chr7:21898295 Cme07g02057 Cme-Chr7:25484799 8.29E-22 dispersed
Cme07g01610 Cme-Chr7:21898295 Cme01g02598 Cme-Chr1:33709910 4.31E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g52 . . . . . . . Bma14g00595 . Cmo16g00627 . . . . . Cpe14g00489 . . . . . . . . Cla07g00743 Cam07g0795 Cec07g0861 Cco07g0830 Clacu07g0776 Cmu07g0783 Cre07g1135 . . Cone6ag0816 Cone9ag0816 . . . Cme07g01610 . . . . . . . . . . . . Cma16g00578 . . . . . . . . . . . . . . . . . . . Csa04g00615 Chy07g01196 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009392 0 1 0 3 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34