Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01612 ATGAAGTGCCAGAGCGTAGCGTGCATATGGTCCGGCACGCCTCTGTCGCACAGAGTCACCGCCACAGCCGTGCTGAGCCAACCTCCGACTCTCTACACCGGTGGATCTGATGGCTCAATCATCTGGTGGAAAATTTCAATATCCGATTCCAGCACGGAAATTGAACCGGTTGCTGTATTGTGTGGCCATGCTGCGACAATTGCGGATCTTGGAATTTGTTACCCTGTTATTTCAGGGACGGGTAAGACAGATATTTCAAGTAATGCCGAGGTGAACTCCACTTCAGAAATTTGTGGTGCTCTAGTAAGTGCGTGTTCTGATGGTGTGCTGTGCATTTGGAGCAGGAGAAGTGGACATTGCAGGCGCAGAAGAAAACTACCTGCTTGGGTTGGGAGTCCGTCCGTGGTGCGTACGATTCCGTCAAAACCAAGATATGTATGCGTTGGATGCTATTTTATTGATAGTATTCATTCGTCTGATAATCACTCAGTTGATTCTGCTGAAAGGATTGATGTTTCAGCTGATAGAGAACATCAGCATAAAAAGCATTCCAAATGTTCCGTCGTTATTGTTGATACATATACTCTTACCATCGTTGAAACTGTTGTGCATGGAAATTTGTCTATTGGCTCCTTGAGGTATATGGCCATAGTCTCACCTCTAACTGGTGAGGGAAATGATTCAGCAGCTATAGTTGATTCATTTGGTCGGCTGCAGATGATTTCGTTATCTAAGGAATCTGACCAAGAAGTGGATCAGGTGAGCTTGCACAATAGTTCTCAAGTGGGTATTCCTGTCTGGACTGAGGTATTGAGTGAGAGAGGCCAGGTTGTGTCAGTTGCGATCCAACACAATGTCATTGCCTTTTTGTTGCCTGATCATTGTGTGTTTAAGCTTTTACTCAGTGGTCTGGTGGTTGGAGAGCTTCCTTTTACAGACAGTATCTTTGGCATTAGCGAGTTTACCTCTCAAGCTCATGTTTCTGGAGCAATGTTTCTTGATGGCCGAGATGAATTGAATATCAGGAAAAACCAGGAGTGCCATGAAACATTTGATGAAATATTTACCGTGTGGAATTCTGTAGGTCATGCAGTTATCTACTCGATATCAATTACAAATAAGATATTTGAATACAGACCACTTTACGAAATTCCTGCATCTTGTAATTCCTCAAATATGGGATTGTCAATATCTTTCGTTCAACTAAATCAACATTTCATTCGCGTTGAATCACTTAGCTCTCAAATTGAAGAGCCTTTTCACTGGACTTCTAATATCACAGTCTGGCCACTTCAAGAAAAACATCTTACTCATGGAAAATTGCTGAAATGCAGAATGGTTGGTGAATCTAGTTCATTGACAGAATGGATTCAAGATTCTACTTTTCACGATGAACTTGTAGGGAAATATGTTGTTGGATCTGGGTTGAAATCTGTTTCTAGTTCTGAAAGTGTAAATGATTTATATTTTGGTGACTGTAACAATTTTGTACAGAAAGGACAAATTATATCTTCTTCTATGGTTATTTCTGATAGTTTATCTACTCCTTATGCAGTTGTCTATGGCTACTCTAGTGGTGATGTACAAATTTTAAAACTCGATTTGTTCCAAGGGTTGTCTTCTCATAGAGGAAGTCCACACTGTGAAGTGAATGATGTACCACAACTATATCTTTCAGGTCACACGGGACCTGTACTATGTTTGGCGGTTCATCGGTTGGTGAGCAAAAATAACGAACAATTTCTATTATCTGGAAGTATGGATTGCACCATTCGAATTTGGGATCTTGAATCTGGGAATCTTGTTATGGTAATGCACCACCATGTGGCTCCTGTGAGGCAAATTATTCTTCCTCCTGCTCATACCGACCATCCTTGGAGCGATTGTTTTCTTTCAGTTGGTGAGGATTCTTGTGTTGCTCTTGCCTCCTTAGAGACTTTAAAGGTGGAGAGAATGTTTCCTGGACATCGCAACTATCCTGAAAAAGTTGTGTGGGATAGTGTAAGAGGTTATATAGCATGCATGTGCAGTAACCATTCCAGTACTTCTGATACTGTTGATATATTGTATATTTGGGATATTAAAACGGGTGCTCGCGAGCGAATTATTCCTGGGACAGCATCTCAGTCAGTATTCGATAATTTTTGTAAAGGAATTGGCAAGAACTTTTCTGGTTCTATTCTGAATGGAAATACCTCTGCTTCATCTCTACTCTTTACAACATTTGAAGATGGGAGTCTTTCTGATTCTCTTTCAAGCAATGGTAAGTCAACTAATACATTAAAGGCAATGGCAGATTTAAGTAATAAGGTAGAATCGCAGACGTCCAATGGACATGGTAGAAGTCGAAAGTCTGCCAAATCATTTCTAAACTCGCTCTATAATTTTGAGAGTGGAAGGCATCCTATCAAGTGCTCTTGTCCATTCCCTGGGATTGCTACAATGAGCTTTGACCTTACAGCATTAATGGCTTTCAATCAGAAGTTCAAGTCATTAGCAAATAAAACTAATCTTCAAGATACTGCAGTTCTGAAGGATCAGCAAGCTAGAATGTCAAGTCCCAGTGCCAGGGATAAGAAAATGGACGATTCTTTGGTCCATGAAATTTCAACTGGTTATAATGAAGAGCCTAGCTGGATTTCTTTGTATGAAGAGTGTTTAATTCGGTTCAGCTTGTCCTTTTTGCATGTATGGGGTGTTGACAGCGATCTTGACGATTTGCTAGTAACTGACATGAAATTGAAAAAACCAGAGAGCTTTATTGTGGCTTCTGGTTTGCAGGGGGATAAAGGTTCATTAACAGTGTCATTTCCTGGAATGAGAGCTGTTCTTGAGCTTTGGAAGTCATCCGCAGAGTTTTGTGCTATGAGGTCACTCATGATTCTGTCTCTGGCTCAGCACATGATTAGCTTGTTTCACTCAGGTTCATCTGCCAGCAGTGCGCTGGCAGCTTTCTATATGAGGAATTTTGTGGACAAAGTTCCAGATATAAAGCCTCCTTTACTTCAGCTTTTAGTGGGCTTCTGGCAAGATGAAAGTGAACATGTACGTATGGCTGCTCGTTCTTTGTTCCATTGTGCAGCTTCACGTTCAATTCCACTACCACTAAGAGGTGGAAAATCCACCGAGCATGGAAGTTCGAGTGAAATTGGAGATATTGACACTGAACTTGATGGCTTGAGTATGAATGAGAAGTCTGATTACGGAATATCATCAGACTGCTTTCCTAAAAGCGAAGAGGTTTCTCAGGTTGAGGAACTCAACATACACACCTGGTTAGAATCTTATGAAATGCATGATTGGATTTCTTGCGTAGGGGGAACGAGTCAAGATGCAATGACTTCTCATATTATAGTTGCAGCAGCACTAGCCATTTGGTATCGCAGTCTTGTGAAGAAAAGCCTTTCGATGCTCGTTGTCCATTCATTAGTGAAGTTGGTAAAGTCCATGAATGAGAAATACAGTTCCACCGCTGCAGAGCTCCTTGCTGAAGGTATGGAAAGCACATGGAAGACTTGTCTGGGCAATGAGATTCCTCATCTCATTGAAGATGTGTTACTCCAGCTGGAATATATGAGTGGTCTGTCTCCAAATCAGTTAGTTCAAAATTCATCCCTTTCAGTGGGCATTCGGGAAACCTTGGTTGAAGTTCTTCTCCCAAGTCTAGCCATGGCTGACATACCAGGATTCTTGACCGTAATAGAAAGCCAAATCTGGTCTACTGCATCTGATTCACCTGTTCATCTGGTGTCACTTAAGACACTGATCAGGGTTGTACGTGGTTCTCCTAGAAACCTGGCGCCATATCTTGACAAGGCTGTTAACTTTATTTTGCAAATCATGGACCCCAGCAACTCAGTCATGCGCAAAATTTGTTATCAGAGTTCAATGGCTGCTCTAAAGGAAGTGGTGCATGTCTTTCCAATGGTAGCGTTAAATGATTCTTGGACCAGATTGGCAGTTGGTGATGTAATTGGAGAGCTTAACAGTGCTAGCATTCGTGTGTATGATTTACAAAGTGTTACAAAGATTAAGGTTTTGGATGCAACTGGACCTCCTGGACTTCCAAGTTTGCTTCCAGCAGGTTCAGAAATGGCATTAAGGATCTCAATATCAGCTTTGAGCTTTTCTCCTGATGGCGAGGGGGTAGTTGCCTTTTCTGAACATGGCTTAATGATTCGATGGTGGTCAGTGGGATCTGTATGGTGGGAGAAGCTAAGCCGCAACTTTGTTCCTGTTCAATGCACCAAAGTGATATTTGTTCCTCCATGGGAAGGATTCTCGCCCAATTCTTCGAGGTTAAGTATTATGGCAAGTGCAACGGAACGTCATTCGCAAGCAGTAGATGTGCAGGACAATGTGAGGGCTTTGAGTCATGCAGACATTTTGAAGATTTTGATTCATAGTCTCGACCTTTCTTATCGGCTAGAATGGATTGACGAACGGAAAGTAAAACTCACACGACATGGCAATGAGTTGGGAACTTTTCAAATATAA 4497 41.74 MKCQSVACIWSGTPLSHRVTATAVLSQPPTLYTGGSDGSIIWWKISISDSSTEIEPVAVLCGHAATIADLGICYPVISGTGKTDISSNAEVNSTSEICGALVSACSDGVLCIWSRRSGHCRRRRKLPAWVGSPSVVRTIPSKPRYVCVGCYFIDSIHSSDNHSVDSAERIDVSADREHQHKKHSKCSVVIVDTYTLTIVETVVHGNLSIGSLRYMAIVSPLTGEGNDSAAIVDSFGRLQMISLSKESDQEVDQVSLHNSSQVGIPVWTEVLSERGQVVSVAIQHNVIAFLLPDHCVFKLLLSGLVVGELPFTDSIFGISEFTSQAHVSGAMFLDGRDELNIRKNQECHETFDEIFTVWNSVGHAVIYSISITNKIFEYRPLYEIPASCNSSNMGLSISFVQLNQHFIRVESLSSQIEEPFHWTSNITVWPLQEKHLTHGKLLKCRMVGESSSLTEWIQDSTFHDELVGKYVVGSGLKSVSSSESVNDLYFGDCNNFVQKGQIISSSMVISDSLSTPYAVVYGYSSGDVQILKLDLFQGLSSHRGSPHCEVNDVPQLYLSGHTGPVLCLAVHRLVSKNNEQFLLSGSMDCTIRIWDLESGNLVMVMHHHVAPVRQIILPPAHTDHPWSDCFLSVGEDSCVALASLETLKVERMFPGHRNYPEKVVWDSVRGYIACMCSNHSSTSDTVDILYIWDIKTGARERIIPGTASQSVFDNFCKGIGKNFSGSILNGNTSASSLLFTTFEDGSLSDSLSSNGKSTNTLKAMADLSNKVESQTSNGHGRSRKSAKSFLNSLYNFESGRHPIKCSCPFPGIATMSFDLTALMAFNQKFKSLANKTNLQDTAVLKDQQARMSSPSARDKKMDDSLVHEISTGYNEEPSWISLYEECLIRFSLSFLHVWGVDSDLDDLLVTDMKLKKPESFIVASGLQGDKGSLTVSFPGMRAVLELWKSSAEFCAMRSLMILSLAQHMISLFHSGSSASSALAAFYMRNFVDKVPDIKPPLLQLLVGFWQDESEHVRMAARSLFHCAASRSIPLPLRGGKSTEHGSSSEIGDIDTELDGLSMNEKSDYGISSDCFPKSEEVSQVEELNIHTWLESYEMHDWISCVGGTSQDAMTSHIIVAAALAIWYRSLVKKSLSMLVVHSLVKLVKSMNEKYSSTAAELLAEGMESTWKTCLGNEIPHLIEDVLLQLEYMSGLSPNQLVQNSSLSVGIRETLVEVLLPSLAMADIPGFLTVIESQIWSTASDSPVHLVSLKTLIRVVRGSPRNLAPYLDKAVNFILQIMDPSNSVMRKICYQSSMAALKEVVHVFPMVALNDSWTRLAVGDVIGELNSASIRVYDLQSVTKIKVLDATGPPGLPSLLPAGSEMALRISISALSFSPDGEGVVAFSEHGLMIRWWSVGSVWWEKLSRNFVPVQCTKVIFVPPWEGFSPNSSRLSIMASATERHSQAVDVQDNVRALSHADILKILIHSLDLSYRLEWIDERKVKLTRHGNELGTFQI 1498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21910119 21921719 + MELO3C016336.2.1 Cme07g01612 333628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01612 1498 ProSitePatterns Trp-Asp (WD) repeats signature. 582 596 IPR019775 -
Cme07g01612 1498 SUPERFAMILY ARM repeat 956 1309 IPR016024 -
Cme07g01612 1498 Gene3D - 518 805 IPR015943 GO:0005515
Cme07g01612 1498 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 558 600 - -
Cme07g01612 1498 SUPERFAMILY WD40 repeat-like 15 291 IPR036322 GO:0005515
Cme07g01612 1498 Gene3D - 4 281 IPR015943 GO:0005515
Cme07g01612 1498 PANTHER RABCONNECTIN-3B, ISOFORM A 1 1497 - -
Cme07g01612 1498 ProSiteProfiles Trp-Asp (WD) repeats profile. 558 604 IPR001680 GO:0005515
Cme07g01612 1498 SMART WD40_4 53 114 IPR001680 GO:0005515
Cme07g01612 1498 SMART WD40_4 5 44 IPR001680 GO:0005515
Cme07g01612 1498 SMART WD40_4 598 643 IPR001680 GO:0005515
Cme07g01612 1498 SMART WD40_4 646 693 IPR001680 GO:0005515
Cme07g01612 1498 SMART WD40_4 551 595 IPR001680 GO:0005515
Cme07g01612 1498 PANTHER RABCONNECTIN-3B, ISOFORM A 1 1497 - -
Cme07g01612 1498 Pfam WD domain, G-beta repeat 557 595 IPR001680 GO:0005515
Cme07g01612 1498 SUPERFAMILY WD40 repeat-like 8 705 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01612 K24738 WDR7; rabconnectin-3b - csv:101221785 2736.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01612 Cme-Chr7:21910119 Cme11g02020 Cme-Chr11:28053151 7.15E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g47 . Blo03g00223 Bda06g00120 . . Bpe07g00097 . . . . . . . . . . . . . . . . . . Cla07g00745 Cam07g0798 Cec07g0863 Cco07g0835 Clacu07g0778 Cmu07g0786 Cre07g1139 . . Cone6ag0814 Cone9ag0813 . . . Cme07g01612 . . . . . . . Bma12g00068 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00613 Chy07g01198 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007130 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 37