Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01613 ATGGGTGATGACAATATTAATCAAATGGGAACTACTAGTTCATCGTCAATGATGAATAATTGTGAGATTATTGATTGGGATGGGCTATTTTCTAGTTCTTGTTTGAGTAATAACAATTTGGAGATGGTAGAGAAGGGAATTTGTGGAAGTGAGGATGATAATAATTATTATCCAATGGGAGATAGTAATTATGATAATAATAATAATGTTGTTATTGGAGGAGTAAAAGAGGGTGATATTGTTATTAGTGGAGGGAATAATCATAATAACAACAATAATATTAAGTATAAAGGGAGAATGGTGATGGGTAAAAGAAGAAGTGCAATGGCTTCTCCAAGAATTGCTTTTCAAACAAGAAGTGTTGAGGATGTTCTTGATGATGGCTATAGATGGAGGAAATATGGTCAGAAGGCTGTCAAACATAGCAACCATCCTAGGAGCTATTACAGGTGTACACATCACACATGCAATGTTAAGAAACAAATTCAAAGGCATTCAAAGGATCCAACAATAGTTGTTACAACATATGAAGGGATTCACAATCATCCATCTGAGAAATTAATGGAAACTCTAACCCCTCTTCTCAAGCAATTGCAATTCCTTTCAGGCATTTAG 615 34.47 MGDDNINQMGTTSSSSMMNNCEIIDWDGLFSSSCLSNNNLEMVEKGICGSEDDNNYYPMGDSNYDNNNNVVIGGVKEGDIVISGGNNHNNNNNIKYKGRMVMGKRRSAMASPRIAFQTRSVEDVLDDGYRWRKYGQKAVKHSNHPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEGIHNHPSEKLMETLTPLLKQLQFLSGI 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21921994 21924242 - MELO3C016337.2.1 Cme07g01613 333629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01613 204 Gene3D WRKY domain 110 184 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme07g01613 204 SUPERFAMILY WRKY DNA-binding domain 119 184 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme07g01613 204 SMART WRKY_cls 125 184 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme07g01613 204 PANTHER WRKY TRANSCRIPTION FACTOR 43-RELATED 15 200 - -
Cme07g01613 204 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 15 200 IPR044810 GO:0003700
Cme07g01613 204 Pfam WRKY DNA -binding domain 126 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme07g01613 204 ProSiteProfiles WRKY domain profile. 120 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01613 Cme-Chr7:21921994 Cme08g00164 Cme-Chr8:1148798 2.90E-31 dispersed
Cme06g01105 Cme-Chr6:8334020 Cme07g01613 Cme-Chr7:21921994 5.69E-18 transposed
Cme06g01785 Cme-Chr6:20817270 Cme07g01613 Cme-Chr7:21921994 9.18E-38 transposed
Cme07g01915 Cme-Chr7:24377154 Cme07g01613 Cme-Chr7:21921994 2.43E-21 transposed
Cme06g00148 Cme-Chr6:896741 Cme07g01613 Cme-Chr7:21921994 1.53E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41664 PF03106 WRKY 8.50E-25 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01613 - - cmo:103493140 392.504