Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01614 ATGGAGGATTGGGGTTTGCAAGCAATTGTAAAAGGGTGCAACGGAATACCAATTGGTTCTTCAACAACAGCAGCAACAACAAGGCTTATGGAAGATACAAATAATTTGTATTCTTTTTTGAGATCAGATCAAGAAGAAGATGGAGGATTTTTTTCTTCTTGTGTTTATAATAATTATTATAATCCTCAAATTTCAAGTTCTTCAATATTTCATGATGAGTTTGAAGGATTATTTGGAAGGAATTCATCCAATAATTCAGCAGCTGCCTCCATTTCTCATCTTCTTAGAGATTTTAAGGAACCTGCTGATCAAAAGCTTCATCACAAGAACCAAATTATCCAACCAACTAAACAGAAACAAAGCAAGAAAAGTAGACAAAATAGGGTAGTGAAAGAGGTGAAAGCAGATAAAGTATGTTCAGATTCATGGGGATGGAGAAAATATGGACAAAAACCAATCAAAGGCTCTCCATACCCAAGAAGCTATTATAGATGCAGCTCCTCGAAAGGATGTTCTGCTCGAAAGCAAGTCGAACGTAGCCTCTCCGATCCCGAAGTCTTTGTCGTAACCTACACAGCCGAGCACAACCATGCCGAGCCTACTCGCCGTAACGCCCTTGCAGGGACCACCCGGAAGAAGTTCCCGGCGCTTGAGAACCCGAATTTGGACATGATTCTCTCACCTAATAATTCGACTTCAGTGGCATCCATTGAAGAAGATCAACATCATCCAATGGAAGGTGTGGCAGATGGGGAAGTTTTGATGGATATGCCATTTGAATTCTTCACTGGTTTGGAGGATTTACTTTTTGGATGA 816 40.32 MEDWGLQAIVKGCNGIPIGSSTTAATTRLMEDTNNLYSFLRSDQEEDGGFFSSCVYNNYYNPQISSSSIFHDEFEGLFGRNSSNNSAAASISHLLRDFKEPADQKLHHKNQIIQPTKQKQSKKSRQNRVVKEVKADKVCSDSWGWRKYGQKPIKGSPYPRSYYRCSSSKGCSARKQVERSLSDPEVFVVTYTAEHNHAEPTRRNALAGTTRKKFPALENPNLDMILSPNNSTSVASIEEDQHHPMEGVADGEVLMDMPFEFFTGLEDLLFG 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21928416 21930176 - MELO3C016338.2.1 Cme07g01614 333630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01614 271 SMART WRKY_cls 139 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme07g01614 271 MobiDBLite consensus disorder prediction 105 130 - -
Cme07g01614 271 PANTHER WRKY TRANSCRIPTION FACTOR 63-RELATED 3 234 - -
Cme07g01614 271 Gene3D WRKY domain 119 201 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme07g01614 271 ProSiteProfiles WRKY domain profile. 134 200 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme07g01614 271 SUPERFAMILY WRKY DNA-binding domain 137 200 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme07g01614 271 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 234 IPR044810 GO:0003700
Cme07g01614 271 Pfam WRKY DNA -binding domain 141 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01614 - - - csv:101213208 478.404
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01614 Cme-Chr7:21928416 Cme08g00057 Cme-Chr8:449728 8.39E-35 dispersed
Cme06g00151 Cme-Chr6:903897 Cme07g01614 Cme-Chr7:21928416 3.12E-44 wgd
Cme07g01614 Cme-Chr7:21928416 Cme09g01938 Cme-Chr9:23415488 3.59E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g45 . . . . Bpe05g00659 . . . . Cmo16g00630 . . Car02g00702 . . Cpe14g00491 Cpe05g00637 . . . . . . . Cla07g00748 Cam07g0800 Cec07g0865 Cco07g0839 Clacu07g0780 Cmu07g0788 Cre07g1142 . . Cone6ag0812 Cone9ag0811 . . . Cme07g01614 . . Bda07g01906 . . . Bma05g00832 . . Cmo02g01102 Cmo15g01124 . Cma16g00580 . . . . . . . . . . . . . . . . . . . Csa04g00611 Chy07g01200 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007717 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41665 PF03106 WRKY 8.30E-26 CL0274 Cme TF