Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01619 ATGCCAAGAAGGATTACAATTTGGCCAAGCACCCAGAAATCGACGTGCCTAACTTGCAGCTTCAAGTCCAAGGAATATGTGCGCGAGACATTTGCTTGGATGCATTACTACTGGTACCTCACCAATGATGGCATTGAGTTCCTTAGGACTTACCTCAATCTCCCTTCTGAAATTGTCCCTGCTACCTTGAAGAAACAAGCTAAGCCCGCTGGTAGGCCCTTTGGCGGACCACCTGGCGATCGCCCACGGGGTCCACCTCGTTTTGAGGGTGGTGAGAGGAGGTTTGGTGACCGTGATGGTTACCGTGGAGGTCCTCGTGGACCCGGCGGTGAGTTTGGTGGCGACAAAGGAGGAGCCCCTGCAGATTACAGGCCTTCGTTTGGGGGTCCTGGTGGAAGGCCAGGTTTCGGCCGTGGAGCTGGTGGCTATGGCGGAGGAGCTGCACCAAGCTCAAACCTTCCTTGA 465 55.05 MPRRITIWPSTQKSTCLTCSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPRGPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGGAAPSSNLP 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21985730 21988142 + MELO3C016343.2.1 Cme07g01619 333635

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01619 154 MobiDBLite consensus disorder prediction 85 101 - -
Cme07g01619 154 Pfam Plectin/S10 domain 16 66 IPR005326 -
Cme07g01619 154 PANTHER 40S RIBOSOMAL PROTEIN S10-1-LIKE 18 154 - -
Cme07g01619 154 Gene3D - 6 76 IPR036388 -
Cme07g01619 154 MobiDBLite consensus disorder prediction 63 154 - -
Cme07g01619 154 PANTHER 40S RIBOSOMAL PROTEIN S10 18 154 IPR037447 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01619 K02947 RP-S10e, RPS10; small subunit ribosomal protein S10e - csv:101212088 146.362
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme07g01619 Cme09g01792 CCT
Cme07g01619 Cme09g01792 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01619 Cme-Chr7:21985730 Cme09g01792 Cme-Chr9:22334035 1.33E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g35 Blo02g01118 Blo03g00220 Bda06g00117 Bda08g00506 Bpe05g00656 Bpe07g00101 . Bma14g00600 . Cmo16g00634 Cma02g01428 Cma15g01250 Car02g01196 Car15g01127 . Cpe14g00495 Cpe05g00358 . . . . . . . Cla07g00759 Cam07g0815 Cec07g0875 Cco07g0850 Clacu07g0793 Cmu07g0801 Cre07g1155 Cone8ag0280 Cone12ag0286 Cone6ag0806 Cone9ag0803 . Csa05g00250 . Cme07g01619 . . . . . Bpe11g00668 Bma05g00828 Bma12g00070 . Cmo02g01462 Cmo15g01315 . Cma16g00584 . . . Cpe13g00135 Bhi12g00301 . . . . . Lcy12g1619 Cla01g00233 Cam01g0239 Cec01g0231 Cco01g0246 Clacu01g0237 Cmu01g0229 Cre09g2281 Lsi09g00225 Csa04g00606 Chy07g01206 Cme09g01792
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0047521 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1