Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01621 ATGCTGATTCAAGCTTACTCCCAGAACCCCCATTTTTTCTTTCTTCCCCCAAACCCTTCAATTTCCCCCCACCTCTCCTTCAATGTTTCTCATTCGCCTAAACTTAAATCGCCGGTGGGTCGACGATATGAATCAATGTCCAGGATTTCAGCTTCTGGGGAGCACAATCCCACCATCATTTTGGGGAAGAAAAGAAAGGTTTTCGAACACATTTCTTTGCTTAAAGCCAAGGAAAATATTTCTGAAGATGAAGAGAATGATATGCTCGATTATCTCTATACCACGCAGTATCAAATGAGGGGCATTGTGGCCGTTTCATTAGGACGTGCTTGTGATCAAAATAATGGAAGGTATACCCATGGTGTGTATATGCGTTTCCAAAGTAAGGAAGACCTTGAAAAATTCTATGTGAATCCTTTCTACTTGCGAGTACTAAATGAGCATGTGATGCCTTATTGTCATGGACTGGTTCATGTAGATTATGAATCAGAGGTGGAAGATGACATGCTTCCCATATTTCGTAAAGGAGAGGAGTTCAATTATGGTGTGGAGTTCGTGCTTCTCATTAAATTTTGTCAAGATTCATTTGGCAAACCATTAGAAGATGCATTAAATTCTCTCGAGAGACTGACAATTGATAATCCTTCCTTAATTGTCCAGTTTACTCAAGGTTTAAATTTTAATCCTACTTGTAAGGAGTTCACACATGGAGTTGTTATACGATTTCGGTCAATCAATGCCTTTGAGATATTTACCAGCAGCACAGAATACAAAGATACGTGGAAATCTAAATTCCAACCAATCGTTCAGAAGACAGTGCCTCTTCACTTCTCTGTTGACCCAGTAGGGACGGAGATCATGTAG 864 40.05 MLIQAYSQNPHFFFLPPNPSISPHLSFNVSHSPKLKSPVGRRYESMSRISASGEHNPTIILGKKRKVFEHISLLKAKENISEDEENDMLDYLYTTQYQMRGIVAVSLGRACDQNNGRYTHGVYMRFQSKEDLEKFYVNPFYLRVLNEHVMPYCHGLVHVDYESEVEDDMLPIFRKGEEFNYGVEFVLLIKFCQDSFGKPLEDALNSLERLTIDNPSLIVQFTQGLNFNPTCKEFTHGVVIRFRSINAFEIFTSSTEYKDTWKSKFQPIVQKTVPLHFSVDPVGTEIM 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21992668 21995287 + MELO3C016345.2.1 Cme07g01621 333637

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01621 287 Gene3D - 182 282 - -
Cme07g01621 287 ProSiteProfiles Stress-response A/B barrel domain profile. 68 161 IPR013097 -
Cme07g01621 287 Gene3D - 61 166 - -
Cme07g01621 287 PANTHER - 22 287 IPR044662 -
Cme07g01621 287 SUPERFAMILY Dimeric alpha+beta barrel 67 171 IPR011008 -
Cme07g01621 287 ProSiteProfiles Stress-response A/B barrel domain profile. 183 277 IPR013097 -
Cme07g01621 287 Pfam Stress responsive A/B Barrel Domain 69 162 IPR013097 -
Cme07g01621 287 SUPERFAMILY Dimeric alpha+beta barrel 183 282 IPR011008 -
Cme07g01621 287 PANTHER EXPRESSED PROTEIN 22 287 - -
Cme07g01621 287 SMART Dabb_2 68 163 IPR013097 -
Cme07g01621 287 SMART Dabb_2 183 279 IPR013097 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01621 - - - csv:101221322 563.918
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g02070 Cme-Chr5:28919575 Cme07g01621 Cme-Chr7:21992668 5.78E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g358 . . Bda06g00082 . . Bpe07g00117 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g01621 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00604 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007129 1 2 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 8 1 37