Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01624 ATGGGATATTTTGCTTCTGTCCAGATTTTCTGTCTGATCTCTGCAGTTCTTATTGTGACCAGTGATTCCTTTGCGTTGAATGAAGCATCGGCTCTTAAATCCTTCAAAGATCAAATATCTGAAGACCCAACTCGAGTTTTTTCAAATTGGGATTTACAAGTTGAAAAAAATCCCTGTAACTGGTCTGGAATCGCCTGTTCTCCAGATGGAGGCCATGTTATAAAGCTAGACATTTCTAGAGCATCACTGAAAGGATTTCTAGCACCAAGCTTGGGTCAACTCAGCTTCTTGCAAGAACTGTATCTTCATGACAACAATCTGCTTGGAACAATACCCAAGGAGCTGGGATTATTGAAGAAACTTAAGGTCCTTGATTTGGGAGCAAATCGACTCTCTGGCTCGATCCCCTCAGAAATTGGGGGTTTAACAGATATTCTGAAAATCAACTTTGGATCAAACGGATTGACCGGGAGGCTACCCCCTGAGCTGGGAAATTTGAGATACCTCAGAGAACTTAGGGTTGATAGGAATAAACTTCAAGGATTTATTCCAGATGGTGACACTTCAAAGTATACATCCAATATGCATAGAAGGTATGCTCCAAATGCACCTGGATTTTGTCACTTAACTGAGCTCAAGGTTGCAGATTTTTCATACAATTTCTTTGTTGGGAAAATACCCAAGTGCTTAGAGGGCCATCTCCCAAAGTCAAGTTTTCAAGGGAACTGTCTTCAATACAATGATCCTAAACAGCGTACTGCTGCTCAATGTGGTGCTGGTGCTTCTCCTGCTCAATCACATCCAGGAGGCAGCTCGAAGCATGTACCAGCCGAACATGCTTCGAAACACCAAAGAGCTTCAAAACCTGCCTGGCTTCTAACCCTTGAAATTATCACTGGAATCACAACGGGTTCTTTATTTCTAGTTGCTGTGATCACTTCTCTTCGGAGATGCAATGGCAAATCCTCAATCATCATCCCGTGGAAGAAATCCTCAAGTGGGAAGGACCATGTTACTCTTCACATCGACACCGAGATGTTGAAAGATGTGCCAAGCATCAGCAGGCAAGAGCTTGAAGTAGCCTGTGAAGATTTCAGTAATATTATTGGCTCCTCACCGGACAGTATAGTGTACAAGGGCACCATGAAAGGTGGACCTGAGATTGCTGTTATCTCAATATGCATTAAAGAAGAAAACTGGACAGACTATCTCGAGCTTTATTTTCAGCGAGAGGTGGCAGATCTAGCAAGACTAAATCATGAGAATGTAGGAAAGTTGCTAGGCTATTGTAAAGAAAGCAGTCCATTTACTAGGATGCTGGTTTTTGAATATGCATCAAATGGCACGTTATACGAGCACCTTCATTATGGAGAAGGTTGTTTATCCTGGACACGTCGCATGAATATAATTTTGGGCATGGCCCGCGGACTTAAGTATCTTCATAGTGAACTTCAACCACCATTTACTATATCAGAGTTGAATTCCGGTGCTGTATATCTTACAGATGACTTCTCACCCAAGTTGGTTGACTTTGAAAGCTGGAAGACCATTCTTTCAAGGTCAGAAAAGAACTCAGGCTCCATTGGAAACCAAGTCACTCAATGTATTCTTCCAAATTCGCTTGAACCACGTCATCTCGACATAGAAAGTAACATCTACGCATTTGGTGTTCTTTTACTGGAAGTAGTCAGTGGGAGACCTCCATACTGTAAGGACAAAGAATGCTTAGTAGACTGGGCCAAGGAATACCTCGAATCGCCTGATGGGATGTCCTGCTTGGTAGACCCAGAAGTGAAGCATTTTGCAGATGAAGATCTGAGGACGATATGTGAGGTCGTAAATCTTTGCATTCATCCACAGCCAGCCAAGCTGATTTGTATGCAGGACTTATGCAGCATGTTAGAGACCAGAATTGATACCTCAGTCTCTGTTGAGTTGAAGGCGTCTTCTCTTGCTTGGGCGGAACTTGCACTTTCTTCATAG 1983 42.81 MGYFASVQIFCLISAVLIVTSDSFALNEASALKSFKDQISEDPTRVFSNWDLQVEKNPCNWSGIACSPDGGHVIKLDISRASLKGFLAPSLGQLSFLQELYLHDNNLLGTIPKELGLLKKLKVLDLGANRLSGSIPSEIGGLTDILKINFGSNGLTGRLPPELGNLRYLRELRVDRNKLQGFIPDGDTSKYTSNMHRRYAPNAPGFCHLTELKVADFSYNFFVGKIPKCLEGHLPKSSFQGNCLQYNDPKQRTAAQCGAGASPAQSHPGGSSKHVPAEHASKHQRASKPAWLLTLEIITGITTGSLFLVAVITSLRRCNGKSSIIIPWKKSSSGKDHVTLHIDTEMLKDVPSISRQELEVACEDFSNIIGSSPDSIVYKGTMKGGPEIAVISICIKEENWTDYLELYFQREVADLARLNHENVGKLLGYCKESSPFTRMLVFEYASNGTLYEHLHYGEGCLSWTRRMNIILGMARGLKYLHSELQPPFTISELNSGAVYLTDDFSPKLVDFESWKTILSRSEKNSGSIGNQVTQCILPNSLEPRHLDIESNIYAFGVLLLEVVSGRPPYCKDKECLVDWAKEYLESPDGMSCLVDPEVKHFADEDLRTICEVVNLCIHPQPAKLICMQDLCSMLETRIDTSVSVELKASSLAWAELALSS 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22018419 22023071 + MELO3C016348.2.1 Cme07g01624 333640

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01624 660 MobiDBLite consensus disorder prediction 254 283 - -
Cme07g01624 660 ProSiteProfiles Protein kinase domain profile. 363 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g01624 660 Gene3D Ribonuclease Inhibitor 142 260 IPR032675 -
Cme07g01624 660 Gene3D Phosphorylase Kinase; domain 1 337 444 - -
Cme07g01624 660 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 660 - -
Cme07g01624 660 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Cme07g01624 660 SUPERFAMILY L domain-like 26 230 - -
Cme07g01624 660 Gene3D Ribonuclease Inhibitor 27 141 IPR032675 -
Cme07g01624 660 PANTHER PROTEIN MALE DISCOVERER 2 9 660 - -
Cme07g01624 660 Gene3D Transferase(Phosphotransferase) domain 1 445 650 - -
Cme07g01624 660 Pfam Protein tyrosine and serine/threonine kinase 367 572 IPR001245 GO:0004672|GO:0006468
Cme07g01624 660 SUPERFAMILY Protein kinase-like (PK-like) 342 635 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01624 - - - csv:101211360 1270.37
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme07g01624 Cme09g01747 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01624 Cme-Chr7:22018419 Cme09g01747 Cme-Chr9:21987251 0 dispersed
Cme07g01624 Cme-Chr7:22018419 Cme12g01746 Cme-Chr12:24175729 1.87E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g341 . . Bda06g00084 . . Bpe07g00114 . . . Cmo16g01091 Cma02g01466 Cma15g01218 Car02g01230 Car15g01098 . Cpe14g00501 Cpe05g00322 . . . . . . . Cla07g00765 . . . . . . Cone8ag0315 . . Cone9ag0768 . Csa05g00296 Chy09g01210 Cme07g01624 . . . . . . . . . Cmo02g01503 Cmo15g01283 . Cma16g00589 . . . Cpe13g00162 Bhi12g00234 . . . . . . Cla01g00277 . . . . . . Lsi09g00275 Csa04g00601 Chy07g01211 Cme09g01747
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001701 1 3 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 3 3 1 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65025 PF07714 PK_Tyr_Ser-Thr 4.40E-20 CL0016 Cme PK