Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01631 ATGTATTCTCCTGATGGGCCTTCCTCCATTTTTGCCATTGGCCCATTTGCTCATGAACCACAATTAGTGTCTCCACCTCTGAATTTCTCTACTCTTACTACTGAACCATCAACTCCTCCCTTCACTCCTCCCGAATCTATCCACTTGACTACACCTTCTTCCCCTGAAGTTCCTTTTGCTCAGTTTGTTCCGCCTAGTCTTCAGAAAGTTGAGTCTGATAATCAATATACATTTCCTAATGATGATTTTCAATCTTACCAATTCTATCCAGGTAGTCCGGTTAGTCACCTCATATCACCACGGTCGGTTATTTCTCGTTCTGGGGCTTCGTCGCCTTTGCCTGACTATGATTTTGCTTCCTTTGGTTCTCAATTTTTGAATTTCCCATTAGAAGTTCCACCTACTTTGTCGAACCTTGACAAACATTCCATTCATAACTGGCGACAACGTCAAAGTACTGATTCTTGTACTCAAGATTCTATAGAATTCAAATCAAGTAATGACTTTGTTTTGAATCCCCATACTTCAGAATCTATGTGTGATCACCACGCAACAAATGAATCTCAAAATATCCAAATTCTCATCGATGATGGAAGCAAAAGGGAGGAAGAGCCAGGAGCTACTAATCATAGATTCTCATTTGAGTTATCTGATGGAGATGTTTTATCACAAAGCGTAGGAAGTAAGCCATTGGAATCAAACGAACTTCCAGTTGAATCATCGCCAATACATGAACCATTTGAAACGACTAAAGAAAATTCTCCTCATGGTGACCATACTTCAAATGTTATAGAAGAAAAGACAAAAGCAGACGGTGATGAAGCACATCAGCATCAAGAACATCATTCCGTTGCTCTTGGGTCTGTGAAGGAATTCAATTTTGATAATCGTAATGGAAGTGATACACATAACCCAAAAATAAATTCAGATTGGTGGACTAATGCAAAGGATGGTAGCACAGAAGGCACAACCACCGGGGCCTGGTCATTCTTTCCAACGACGCAACAAAGATGA 1014 40.34 MYSPDGPSSIFAIGPFAHEPQLVSPPLNFSTLTTEPSTPPFTPPESIHLTTPSSPEVPFAQFVPPSLQKVESDNQYTFPNDDFQSYQFYPGSPVSHLISPRSVISRSGASSPLPDYDFASFGSQFLNFPLEVPPTLSNLDKHSIHNWRQRQSTDSCTQDSIEFKSSNDFVLNPHTSESMCDHHATNESQNIQILIDDGSKREEEPGATNHRFSFELSDGDVLSQSVGSKPLESNELPVESSPIHEPFETTKENSPHGDHTSNVIEEKTKADGDEAHQHQEHHSVALGSVKEFNFDNRNGSDTHNPKINSDWWTNAKDGSTEGTTTGAWSFFPTTQQR 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22060798 22063444 - MELO3C016355.2.1 Cme07g01631 333647

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01631 337 MobiDBLite consensus disorder prediction 245 261 - -
Cme07g01631 337 MobiDBLite consensus disorder prediction 295 337 - -
Cme07g01631 337 MobiDBLite consensus disorder prediction 221 261 - -
Cme07g01631 337 MobiDBLite consensus disorder prediction 221 235 - -
Cme07g01631 337 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 1 335 - -
Cme07g01631 337 MobiDBLite consensus disorder prediction 27 55 - -
Cme07g01631 337 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 1 335 IPR040420 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01631 - - - csv:101220378 641.343
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01019 Cme-Chr6:7360764 Cme07g01631 Cme-Chr7:22060798 3.81E-56 dispersed
Cme07g00007 Cme-Chr7:87113 Cme07g01631 Cme-Chr7:22060798 1.50E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g303 . . . . . . . . . Cmo16g00645 . . . . . . . . . . . . . . Cla07g00774 Cam07g0832 Cec07g0887 Cco07g0864 Clacu07g0809 Cmu07g0815 Cre07g1169 Cone8ag0293 Cone12ag0299 . . . . . Cme07g01631 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy07g01217 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010049 0 2 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33