Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme07g01632 | ATGGATGATTTTGCTTCATCATCTTCTAGATTTCATCATCATGACTACTACAACAACAAAGACAGAAGAATCCGAGATTTTGATGACGAACAACAACAACGGAAACAACAACAAGATCAAGAAATGGAAGAAGAATCTTGTAACAACAACAGCAGCAACAACAATAATTGTTCTATTTTTGTAGAGAAAGAGCATATGTTTGACAAAGTTGTAACGCCAAGCGATGTGGGGAAACTAAACCGTTTAGTTATCCCAAAACAACATGCTGAAAAATACTTCCCACTTGATTCTTCATCAAACGAAAAAGGTCTTCTCTTAAACTTTGAAGATCGTTGCGGTAAACTATGGCGGTTTCGTTACTCTTACTGGACTAGTAGCCAAAGCTATGTCATGACTAAAGGTTGGAGCCGCTTTGTCAAAGACAAAAGGCTCGATGCTGGTGATATTGTTTCTTTTCAAAGACCCCTTCATCGTAATCAAGATCGTTTTTTTATCGATTGGCGACGCCGTCCTCCGCACCCGGCTGTCGACATGCCTTTTCATTTCCACCGCCATGACGGTGGCACCAGTGCCGCCCAATTTCCTCCTCCTCCTCCTCCTCATCACCATTTTCAGCTTCATAGCCAGTGGAATAATAACCCAGTGGCCACACCCTTATCTTTACAAAGGGACCACGTCCTCCACTTGCCACAGTATAATAATAATGTCAGTTTATTTCATAATACATATAATCATCATCATCATCATCATAATCGTTATCTTGACGGTTCGTATGGTGGAGCATCGGTTTTTTACCATTTGAGATCCCCAATCGCACCACCGCAGATAGAGTCGGTGCCAGTAGTAGTGGATGGAAATGGTGGTAATGGTACTGGTGGTGGTAGTGGAATTGGAAGAACGTCTGCGGCTAAGACGACGTTGAGGCTTTTTGGTGTTGACATGGAATGTGAAGTATCTGATGATGAGTGTGACGTAGCAACAACTTCGAAGACAATGACGTCGTCGTCGCAATTTCATGTTTATAATGGAATGCCGATGCCGATGCTGACGCCGATGACGATGCAGATGCCCACGAGCAATGATAATATATCAACTATGGAGTTCTTTGAGAAAGGGAAGTCGTCGATGTCGTCAATGTCGTCTTTTGATTTTGGTACTTGA | 1161 | 42.55 | MDDFASSSSRFHHHDYYNNKDRRIRDFDDEQQQRKQQQDQEMEEESCNNNSSNNNNCSIFVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRCGKLWRFRYSYWTSSQSYVMTKGWSRFVKDKRLDAGDIVSFQRPLHRNQDRFFIDWRRRPPHPAVDMPFHFHRHDGGTSAAQFPPPPPPHHHFQLHSQWNNNPVATPLSLQRDHVLHLPQYNNNVSLFHNTYNHHHHHHNRYLDGSYGGASVFYHLRSPIAPPQIESVPVVVDGNGGNGTGGGSGIGRTSAAKTTLRLFGVDMECEVSDDECDVATTSKTMTSSSQFHVYNGMPMPMLTPMTMQMPTSNDNISTMEFFEKGKSSMSSMSSFDFGT | 386 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 22077795 | 22079992 | - | MELO3C016356.2.1 | Cme07g01632 | 333648 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme07g01632 | 386 | CDD | B3_DNA | 65 | 154 | IPR003340 | GO:0003677 | |
| Cme07g01632 | 386 | Gene3D | - | 60 | 177 | IPR015300 | - | |
| Cme07g01632 | 386 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
| Cme07g01632 | 386 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 30 | 359 | IPR044800 | GO:0003700 | |
| Cme07g01632 | 386 | MobiDBLite | consensus disorder prediction | 1 | 54 | - | - | |
| Cme07g01632 | 386 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 | 30 | 359 | - | - | |
| Cme07g01632 | 386 | SUPERFAMILY | DNA-binding pseudobarrel domain | 64 | 165 | IPR015300 | - | |
| Cme07g01632 | 386 | Pfam | B3 DNA binding domain | 67 | 170 | IPR003340 | GO:0003677 | |
| Cme07g01632 | 386 | ProSiteProfiles | B3 DNA-binding domain profile. | 67 | 171 | IPR003340 | GO:0003677 | |
| Cme07g01632 | 386 | SMART | B3_2 | 67 | 171 | IPR003340 | GO:0003677 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme07g01632 | Cme-Chr7:22077795 | Cme11g02307 | Cme-Chr11:30130044 | 7.21E-63 | dispersed | |
| Cme04g02367 | Cme-Chr4:30473183 | Cme07g01632 | Cme-Chr7:22077795 | 2.05E-47 | transposed | |
| Cme07g01632 | Cme-Chr7:22077795 | Cme09g01901 | Cme-Chr9:23146679 | 4.86E-62 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 41667 | PF02362 | B3 | 6.90E-28 | CL0405 | Cme | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme07g01632 | - | - | csv:101220139 | 645.195 |