Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01639 ATGGGGAGATGGCCTATTTCATCCAATGATTCCATTCTAGATTGCAACAAAGATGTTGATCCTAATCCCAGTAATGGCTATTGCATTGCCCCGGATTGTTTGGTAGAAGGAAGTCGTGCTAATGTTGATCATGATGATTGCAAAGCCACGATTAGATGCTATTTTGAAAAAATTCTCTGGGTTTTTCTAAAGGAAATTTGTCGTAGAGGATTTATTAGGCCAGTGCCGGCGTTACTAGGTGAAGGGGGATCTTTGGATTTGTTTGAACTGTTCATGGTAGTAAGAGATAAAGGAGGTTATCAAGTGGTTTCGGAAAAGGAACTATGGTCGTCAGTTGTTGTGGAATTAGGTTTGGATCTTGGGCTTTCGGCTTCAGTGAAATTGATTTATTTCAAGTACTTAAGTGAGCTAGAGAAATGGCTTATGGTGAGACGTGGAGGCACAAAATTGGAAAATGGGAACTCTGATTACTATTACTACAGGAAAAGCTTTCCATGTTTGGCAGAATTGGAGGCAAAGATTAAGGATATGTTATATGGTGTGCTGAGACAAAAGAGCATATATGATGAACGTCCTGGATTCAAATCCAACAAACCGAATGGGAACGTTAATGTTGCCGAAACTGCAGCAGAGAAGGAAATAAAATTCCCTAAAATAGAGAAGAAAGAACATGATCTTCACGAGGACGTCACACCAATTCAACAAAATTGTACTGAGACACCTCGGGTTAATGGCGAAACCAATCAAATCCATGTTATTGGAGATTGTAGAAGTTTGGATGCTGTTAATGTTGAAACTGAAACAGACTCTCATGGGAGATCTCGAGAATCTTTACTACGAATGCTGAAGTGGGTGAGAAAGACTGCAAAGCATCCTGCAAATCCATCAAATGGTACAGTACCGGAGTCATCCAAGTGGAAAGCGTATGCTAGCGATGATGCATTATGGCTTCAAGTTATCAAGGCAAAGGATGCTCTTTTAAATAGGAAGGATGTTGACAAAACCGCTGAGAAACGTCTGTTAATACAGAAGAAAGTAAGGATGCATCCATGCATTTATGAGGATAATATTGATGATAACCATCACCTCTCTACAGAAAGGATCTGTTGCAGCAGAAGATCTAATGCTTTGGCCAAATCTGAATTGGTCGCAAGTAATAATTCATGTCCACCCGTCCGAAGTAATCAGATTGGCAGTCTAACAACAGAAATTGGGAAGGGACTCAAGAATCAAGCACTCTTGAATGGTGATTTAGCATCTGAAATGGAAGACAATCAGGCAAATGAAGATTCTGTTGAGAAGCCGGTTCCTGTAGGTGCTTTATTTCAAGCAGCAATACCTGAATGGACTGGTAATATTTCCGATAGTGACTCTAAATGGTTAGGGACACGGTTGTGGCCTTCTCAACACGAAAATAACAAGTCCGTAAGCAATAGAAATCCCATCGGCAGAGGGAGACTGGATTCATGTAGTTGCCAATTTCCAGGTTCTGTTGAATGTTATAGATTTCATATTGCAGAAGCAAGGATGAGATTAAAGCTCGAACTTGGTTTGACATTCTATGATTGGAGATTTCATCAAATGGGGGAGGAAATATCTCTGCAGTGGACTGCTGAAGAGGAAAAGAGATTTAAAGAGTTGGCAATATCCAGTTTTAATAATCAAAATCAGTGCTTTTGGAACCATTCCTTGAAGTGGTTCCCAATGAAATCGAGGAAAAACTTGATAAGCTATTACTTCAACGTGTTTCTTTTACGGCAGAGAAGCTATCAGAATCGTGTTACTCCAAATGACATTGATAGTGATGATGAAGATGTAGAGTTCGGTTGCATCAGTGGTGATTTTGGGGCTAAGGCAATGGAAATTTTAGGCTCAAAATCTGTAGAATGTTCTGAAAATAAACAGTTCATAGATATTTGA 1920 39.69 MGRWPISSNDSILDCNKDVDPNPSNGYCIAPDCLVEGSRANVDHDDCKATIRCYFEKILWVFLKEICRRGFIRPVPALLGEGGSLDLFELFMVVRDKGGYQVVSEKELWSSVVVELGLDLGLSASVKLIYFKYLSELEKWLMVRRGGTKLENGNSDYYYYRKSFPCLAELEAKIKDMLYGVLRQKSIYDERPGFKSNKPNGNVNVAETAAEKEIKFPKIEKKEHDLHEDVTPIQQNCTETPRVNGETNQIHVIGDCRSLDAVNVETETDSHGRSRESLLRMLKWVRKTAKHPANPSNGTVPESSKWKAYASDDALWLQVIKAKDALLNRKDVDKTAEKRLLIQKKVRMHPCIYEDNIDDNHHLSTERICCSRRSNALAKSELVASNNSCPPVRSNQIGSLTTEIGKGLKNQALLNGDLASEMEDNQANEDSVEKPVPVGALFQAAIPEWTGNISDSDSKWLGTRLWPSQHENNKSVSNRNPIGRGRLDSCSCQFPGSVECYRFHIAEARMRLKLELGLTFYDWRFHQMGEEISLQWTAEEEKRFKELAISSFNNQNQCFWNHSLKWFPMKSRKNLISYYFNVFLLRQRSYQNRVTPNDIDSDDEDVEFGCISGDFGAKAMEILGSKSVECSENKQFIDI 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22131824 22137112 - MELO3C016363.2.1 Cme07g01639 333655

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01639 639 CDD ARID 55 138 - -
Cme07g01639 639 Pfam ARID/BRIGHT DNA binding domain 63 138 IPR001606 GO:0003677
Cme07g01639 639 SMART bright_3 49 143 IPR001606 GO:0003677
Cme07g01639 639 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 638 - -
Cme07g01639 639 Gene3D - 43 149 IPR036431 GO:0003677
Cme07g01639 639 SUPERFAMILY ARID-like 52 145 IPR036431 GO:0003677
Cme07g01639 639 SMART ARID_2 46 138 - -
Cme07g01639 639 ProSiteProfiles ARID domain profile. 49 142 IPR001606 GO:0003677
Cme07g01639 639 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 638 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01639 - - - csv:101219426 1237.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01844 Cme-Chr2:25129106 Cme07g01639 Cme-Chr7:22131824 5.33E-27 dispersed
Cme07g01639 Cme-Chr7:22131824 Cme11g02171 Cme-Chr11:29085980 1.78E-73 dispersed
Cme06g00169 Cme-Chr6:1028906 Cme07g01639 Cme-Chr7:22131824 6.75E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g13 . . . . . . Bma07g01663 . . Cmo16g00656 . . . . . Cpe14g00511 . . . . . . . . Cla07g00785 Cam07g0845 Cec07g0897 Cco07g0880 Clacu07g0820 Cmu07g0824 Cre07g1181 . . Cone6ag0789 Cone9ag0791 . . . Cme07g01639 . . . Bda09g00033 . . . . . . . . Cma16g00601 . . . . . . . . . . . . . . . . . . . . Chy07g01224 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008781 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41668 PF01388 ARID 8.80E-09 CL0123 Cme TR