Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01641 ATGGACCACAGGACTTCAGAGAAAGAAAGAAAAATGGTGGAGCCAGAATTTTGTGCTTCCAATATACAATCTCCTTTCCGTGAGGAGAGTGGGGATGAAGAGCTTTCAGTTCTTCCCAGGCACACTAAAGTTATTGTCACTGGAAATAATAGAACAAAGTCTGTTTTATTGGGATTGCAAGGCGTCGTTAAGAAGGCTGTTGGCCTTGGAGGCTGGCATTGGCTGGTTTTGAAAAATGGGGTGGAAGTGAAGCTACAAAGGAATGCATTGAGTGTGCTGGAACATCCCACAGGAAACGAAAATGATGAACCTGATTTGGACAACTCAAGTTGTAGCTCCGACATCGGAGAGAAGGACAATGATTTCTCTAGCAGCGTTGTTTTCCACAAACTTAGCAAACCAAAAGTGAGGCAGATTAAGCAATGGGCTCCATCTTCATCAGCAAAGTCAACTGGTCGGGGCAGCTATGGAGAAATTCAATCTATTCACATGCCAAAGTCAGGGACGCGGGTCAAACTGGGGAAACTAGGAACAGAGTCTTTGTGGAGATATATCAAGCACTTCAATCTAGTGAATAGCATTTCAAATACTTCAAGAGACCAAATCCTTCACGTTGTACAACGACATTTTGCATTACAGACGAGTTTGAACGAGGCATCAGTGATGACTGAATTCATTCGAGCTGTTAAGAAACGAAGAGAGTGA 705 43.26 MDHRTSEKERKMVEPEFCASNIQSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVLKNGVEVKLQRNALSVLEHPTGNENDEPDLDNSSCSSDIGEKDNDFSSSVVFHKLSKPKVRQIKQWAPSSSAKSTGRGSYGEIQSIHMPKSGTRVKLGKLGTESLWRYIKHFNLVNSISNTSRDQILHVVQRHFALQTSLNEASVMTEFIRAVKKRRE 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22139736 22143705 - MELO3C016365.2.1 Cme07g01641 333657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01641 234 MobiDBLite consensus disorder prediction 140 157 - -
Cme07g01641 234 Pfam Sin3 binding region of histone deacetylase complex subunit SAP30 176 230 IPR025718 GO:0005515
Cme07g01641 234 Gene3D - 156 234 IPR038291 -
Cme07g01641 234 MobiDBLite consensus disorder prediction 140 160 - -
Cme07g01641 234 MobiDBLite consensus disorder prediction 94 114 - -
Cme07g01641 234 PANTHER OS04G0166600 PROTEIN 12 233 - -
Cme07g01641 234 PANTHER SAP30 12 233 IPR024145 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01641 - - - cmo:103493170 469.544
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00614 Cme-Chr4:5913295 Cme07g01641 Cme-Chr7:22139736 4.24E-63 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g2 . . . . . . . . Cmo06g01102 . . . . . . Cpe14g00512 . . . . . . . . . . . . . . . . . Cone6ag0647 Cone9ag0652 . . . Cme07g01641 . . . . . . . . . . . Cma06g01087 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005484 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 40