Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme07g01658 | ATGTCGCTTAAAAGCTTTGTTAGAGAGCTGCGAGAGATGAAAGATGGAATTGGGAGCATTTCTAAGCGAGGAGAAGAAGGGAGTAGGCATTGGCGAAACCGGACAATGTCGCATATTGCACCGGATCAAGAACCTTCTCCATTGGAGTTAATTCAGCAAGGTCGATGGGCAAATCTTCCCCCTGAATTACTTTTAGACATCATCCGGAGAGTGGAAGAGAGTGAAACATCGTGGCCTGCCCGAGCTGTAGTTGTTTTTTGTGCTTCAGTTTGTAGGTCTTGGAGAACCATTACAAAGGAGATTATCAGAACTCCTGAGCAATGTGGAAGGCTCACATTTCCAATCTCATTAAAGCAGCCTGGCCCTCGGGAGTCTCCATTTCAGTGCTTCATCAGAAGGGATAGAGCAACTTCAACCTACCTCCTGTACTTTGGTTTGGTTCCTTCTGAGGACGAAAAGGATAAATTGTTGTTAGCAGCCAAGAGGGTCAGGAGAGCAGCTGGTACTGACTTCATCATATCATTAGCAGCTGATGACTTTTCTCGAGCGAGTAGTACCTATGTAGGTAAATTAAGGTCTAATTTCCTGGGTACGAAGTTCTCGATTTATGACAGCCAGCCTCCTTGTGACCCTGCAGCTCGACAAAATAGCCGGTCAAGCCGTAGATTTCGCTCTAAGCAAGTCTCTCCTAGGGTTCCTGCATGTAACTACAGCGTAGGTACAATATCGTATGAACTTAATGTTCTTCGTACTAGAGGTCCTCGAAGGATGCAGTGCATCATGCAAACGATTCCAGTATCTTCGATTCAGGAGGGAGGCACTGCCCCAACACCTACTTCATTCACATACTCTATTGATGACCACCTTTCTTCCATGTCCGATTCTATGAGAAAGGATTCAACAACCAAGGACTTTGGCTCAAAAATCCAATCAGAACCAGCAGTTCGGGCCTCGGATGAATCCTTGGTACTTAAAAACAAGGCACCGAGATGGCACGAGCAGCTGCAGTGCTGGTGCCTAAATTTCAGAGGGCGAGTGACTGTTGCATCCGTTAAGAACTTTCAACTCGTTGCAGCTGTTGATCAATCTCACAATGTTTCAGTTGAAGAGCAAGAGAAGGTAATTCTCCAGTTCGGAAAAATTGGAAAAGACATCTTCACCATGGATTATCATTATCCCCTCTCTGCATTCCAAGCCTTTGCTATCTGCTTGAGCAGCTTCGACACGAAGCCAGCCTGTGAATGA | 1245 | 45.78 | MSLKSFVRELREMKDGIGSISKRGEEGSRHWRNRTMSHIAPDQEPSPLELIQQGRWANLPPELLLDIIRRVEESETSWPARAVVVFCASVCRSWRTITKEIIRTPEQCGRLTFPISLKQPGPRESPFQCFIRRDRATSTYLLYFGLVPSEDEKDKLLLAAKRVRRAAGTDFIISLAADDFSRASSTYVGKLRSNFLGTKFSIYDSQPPCDPAARQNSRSSRRFRSKQVSPRVPACNYSVGTISYELNVLRTRGPRRMQCIMQTIPVSSIQEGGTAPTPTSFTYSIDDHLSSMSDSMRKDSTTKDFGSKIQSEPAVRASDESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDQSHNVSVEEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE | 414 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 22249029 | 22252227 | + | MELO3C016381.2.1 | Cme07g01658 | 333674 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme07g01658 | 414 | Pfam | Tub family | 117 | 409 | IPR000007 | - | |
Cme07g01658 | 414 | SUPERFAMILY | Tubby C-terminal domain-like | 105 | 414 | IPR025659 | - | |
Cme07g01658 | 414 | Pfam | F-box domain | 56 | 102 | IPR001810 | GO:0005515 | |
Cme07g01658 | 414 | SUPERFAMILY | F-box domain | 50 | 100 | IPR036047 | GO:0005515 | |
Cme07g01658 | 414 | ProSitePatterns | Tub family signature 1. | 342 | 355 | IPR018066 | - | |
Cme07g01658 | 414 | Gene3D | - | 50 | 103 | - | - | |
Cme07g01658 | 414 | PANTHER | TUBBY-RELATED | 1 | 414 | - | - | |
Cme07g01658 | 414 | PRINTS | Tubby superfamily signature | 171 | 187 | IPR000007 | - | |
Cme07g01658 | 414 | PRINTS | Tubby superfamily signature | 187 | 211 | IPR000007 | - | |
Cme07g01658 | 414 | PRINTS | Tubby superfamily signature | 236 | 263 | IPR000007 | - | |
Cme07g01658 | 414 | PRINTS | Tubby superfamily signature | 324 | 341 | IPR000007 | - | |
Cme07g01658 | 414 | PRINTS | Tubby superfamily signature | 342 | 358 | IPR000007 | - | |
Cme07g01658 | 414 | PRINTS | Tubby superfamily signature | 371 | 390 | IPR000007 | - | |
Cme07g01658 | 414 | PRINTS | Tubby superfamily signature | 392 | 414 | IPR000007 | - | |
Cme07g01658 | 414 | PANTHER | TUBBY-LIKE F-BOX PROTEIN | 1 | 414 | - | - | |
Cme07g01658 | 414 | MobiDBLite | consensus disorder prediction | 207 | 227 | - | - | |
Cme07g01658 | 414 | ProSitePatterns | Tub family signature 2. | 399 | 414 | IPR018066 | - | |
Cme07g01658 | 414 | Gene3D | Tubby Protein; Chain A | 114 | 414 | IPR025659 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g00548 | Cme-Chr4:4844554 | Cme07g01658 | Cme-Chr7:22249029 | 0 | dispersed | |
Cme07g01369 | Cme-Chr7:19237423 | Cme07g01658 | Cme-Chr7:22249029 | 7.14E-125 | dispersed | |
Cme07g01658 | Cme-Chr7:22249029 | Cme11g01977 | Cme-Chr11:27746532 | 1.50E-67 | dispersed | |
Cme06g01306 | Cme-Chr6:10907911 | Cme07g01658 | Cme-Chr7:22249029 | 1.30E-154 | transposed | |
Cme07g01658 | Cme-Chr7:22249029 | Cme08g00854 | Cme-Chr8:5627200 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41669 | PF01167 | Tub | 1.20E-106 | CL0395 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme07g01658 | K19600 | - | csv:101205595 | 807.749 |