Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01658 ATGTCGCTTAAAAGCTTTGTTAGAGAGCTGCGAGAGATGAAAGATGGAATTGGGAGCATTTCTAAGCGAGGAGAAGAAGGGAGTAGGCATTGGCGAAACCGGACAATGTCGCATATTGCACCGGATCAAGAACCTTCTCCATTGGAGTTAATTCAGCAAGGTCGATGGGCAAATCTTCCCCCTGAATTACTTTTAGACATCATCCGGAGAGTGGAAGAGAGTGAAACATCGTGGCCTGCCCGAGCTGTAGTTGTTTTTTGTGCTTCAGTTTGTAGGTCTTGGAGAACCATTACAAAGGAGATTATCAGAACTCCTGAGCAATGTGGAAGGCTCACATTTCCAATCTCATTAAAGCAGCCTGGCCCTCGGGAGTCTCCATTTCAGTGCTTCATCAGAAGGGATAGAGCAACTTCAACCTACCTCCTGTACTTTGGTTTGGTTCCTTCTGAGGACGAAAAGGATAAATTGTTGTTAGCAGCCAAGAGGGTCAGGAGAGCAGCTGGTACTGACTTCATCATATCATTAGCAGCTGATGACTTTTCTCGAGCGAGTAGTACCTATGTAGGTAAATTAAGGTCTAATTTCCTGGGTACGAAGTTCTCGATTTATGACAGCCAGCCTCCTTGTGACCCTGCAGCTCGACAAAATAGCCGGTCAAGCCGTAGATTTCGCTCTAAGCAAGTCTCTCCTAGGGTTCCTGCATGTAACTACAGCGTAGGTACAATATCGTATGAACTTAATGTTCTTCGTACTAGAGGTCCTCGAAGGATGCAGTGCATCATGCAAACGATTCCAGTATCTTCGATTCAGGAGGGAGGCACTGCCCCAACACCTACTTCATTCACATACTCTATTGATGACCACCTTTCTTCCATGTCCGATTCTATGAGAAAGGATTCAACAACCAAGGACTTTGGCTCAAAAATCCAATCAGAACCAGCAGTTCGGGCCTCGGATGAATCCTTGGTACTTAAAAACAAGGCACCGAGATGGCACGAGCAGCTGCAGTGCTGGTGCCTAAATTTCAGAGGGCGAGTGACTGTTGCATCCGTTAAGAACTTTCAACTCGTTGCAGCTGTTGATCAATCTCACAATGTTTCAGTTGAAGAGCAAGAGAAGGTAATTCTCCAGTTCGGAAAAATTGGAAAAGACATCTTCACCATGGATTATCATTATCCCCTCTCTGCATTCCAAGCCTTTGCTATCTGCTTGAGCAGCTTCGACACGAAGCCAGCCTGTGAATGA 1245 45.78 MSLKSFVRELREMKDGIGSISKRGEEGSRHWRNRTMSHIAPDQEPSPLELIQQGRWANLPPELLLDIIRRVEESETSWPARAVVVFCASVCRSWRTITKEIIRTPEQCGRLTFPISLKQPGPRESPFQCFIRRDRATSTYLLYFGLVPSEDEKDKLLLAAKRVRRAAGTDFIISLAADDFSRASSTYVGKLRSNFLGTKFSIYDSQPPCDPAARQNSRSSRRFRSKQVSPRVPACNYSVGTISYELNVLRTRGPRRMQCIMQTIPVSSIQEGGTAPTPTSFTYSIDDHLSSMSDSMRKDSTTKDFGSKIQSEPAVRASDESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDQSHNVSVEEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22249029 22252227 + MELO3C016381.2.1 Cme07g01658 333674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01658 414 Pfam Tub family 117 409 IPR000007 -
Cme07g01658 414 SUPERFAMILY Tubby C-terminal domain-like 105 414 IPR025659 -
Cme07g01658 414 Pfam F-box domain 56 102 IPR001810 GO:0005515
Cme07g01658 414 SUPERFAMILY F-box domain 50 100 IPR036047 GO:0005515
Cme07g01658 414 ProSitePatterns Tub family signature 1. 342 355 IPR018066 -
Cme07g01658 414 Gene3D - 50 103 - -
Cme07g01658 414 PANTHER TUBBY-RELATED 1 414 - -
Cme07g01658 414 PRINTS Tubby superfamily signature 171 187 IPR000007 -
Cme07g01658 414 PRINTS Tubby superfamily signature 187 211 IPR000007 -
Cme07g01658 414 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Cme07g01658 414 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Cme07g01658 414 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Cme07g01658 414 PRINTS Tubby superfamily signature 371 390 IPR000007 -
Cme07g01658 414 PRINTS Tubby superfamily signature 392 414 IPR000007 -
Cme07g01658 414 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 414 - -
Cme07g01658 414 MobiDBLite consensus disorder prediction 207 227 - -
Cme07g01658 414 ProSitePatterns Tub family signature 2. 399 414 IPR018066 -
Cme07g01658 414 Gene3D Tubby Protein; Chain A 114 414 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00548 Cme-Chr4:4844554 Cme07g01658 Cme-Chr7:22249029 0 dispersed
Cme07g01369 Cme-Chr7:19237423 Cme07g01658 Cme-Chr7:22249029 7.14E-125 dispersed
Cme07g01658 Cme-Chr7:22249029 Cme11g01977 Cme-Chr11:27746532 1.50E-67 dispersed
Cme06g01306 Cme-Chr6:10907911 Cme07g01658 Cme-Chr7:22249029 1.30E-154 transposed
Cme07g01658 Cme-Chr7:22249029 Cme08g00854 Cme-Chr8:5627200 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41669 PF01167 Tub 1.20E-106 CL0395 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01658 K19600 - csv:101205595 807.749