Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01691 ATGGCCGGTTTTTTCCCACTAGACGGCGGCGGAAGCGGGGGAAGAGTACCCAATTATCATTTTCCCACTCCAACCACCGGCGGCGAAATTATTCATCCGACAACCGAGGGGTTATTTTGGTACAAGAATTATGAGAGATTGGAAACATGGGAAGGAGAAGAAGAACATCAACAGCAGCAGCAACCGGCGCAAGAACAAGGGGGAGAAGGGTTTGTTTACTCCGGCGATGAATCGCCAGCAAGATCGTCGTTGGTGATGGTGAGATCGGGGAGAGGCGGGGGCAGCGGAGGAGGGCCGGTAACGAGTTGCCAAGACTGTGGAAATCAAGCCAAAAAAGATTGTGCTCACATGCGATGTAGAACTTGTTGTAAAAGCCGTGGGTTTGAGTGTGAAACCCACGTGAAAAGCACGTGGGTTCCTGCCTCTAAACGCCGTGACCGCCTCCTCCGTTCCGACGGCCTCAACTCCAAACGCCCTAAAGACACCCACTACCACCCCACTTCTTCAGGGTTGGACATGGCGAATTTTCCGATGGAAGTGACCACACCGGCTGTCTTTCGGTGTGTACGAATGACAACCTTGGACGAAACCGACGACCAATATGCGTATCAAACAGCTGTCAATATCGGAGGCCATATTTTTAAAGGCATTCTTTACGATCACGGCCCTGAACAACCACCTCCCCCGCCCTCCTCCTCCTCCGCCGCCGCATTGCTCGATTCAACTCCGCCCTACCCGACTCCTCTCTCCACCTATATCACCGCCGGTACGCAATTTTTTCTTCCTCCATCATCTTAG 798 52.88 MAGFFPLDGGGSGGRVPNYHFPTPTTGGEIIHPTTEGLFWYKNYERLETWEGEEEHQQQQQPAQEQGGEGFVYSGDESPARSSLVMVRSGRGGGSGGGPVTSCQDCGNQAKKDCAHMRCRTCCKSRGFECETHVKSTWVPASKRRDRLLRSDGLNSKRPKDTHYHPTSSGLDMANFPMEVTTPAVFRCVRMTTLDETDDQYAYQTAVNIGGHIFKGILYDHGPEQPPPPPSSSSAAALLDSTPPYPTPLSTYITAGTQFFLPPSS 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22460299 22461855 - MELO3C027042.2.1 Cme07g01691 333707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01691 265 MobiDBLite consensus disorder prediction 218 241 - -
Cme07g01691 265 PANTHER PROTEIN SHORT INTERNODES 1 225 - -
Cme07g01691 265 Pfam Domain of unknown function (DUF702) 101 224 - -
Cme07g01691 265 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 176 223 IPR006511 -
Cme07g01691 265 MobiDBLite consensus disorder prediction 1 32 - -
Cme07g01691 265 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 225 IPR007818 GO:0003700|GO:0006355
Cme07g01691 265 MobiDBLite consensus disorder prediction 149 170 - -
Cme07g01691 265 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 102 144 IPR006510 -
Cme07g01691 265 MobiDBLite consensus disorder prediction 51 79 - -
Cme07g01691 265 MobiDBLite consensus disorder prediction 149 165 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00742 Cme-Chr2:9283485 Cme07g01691 Cme-Chr7:22460299 2.48E-40 dispersed
Cme03g01908 Cme-Chr3:27196012 Cme07g01691 Cme-Chr7:22460299 1.62E-54 dispersed
Cme04g00500 Cme-Chr4:4044534 Cme07g01691 Cme-Chr7:22460299 4.07E-51 dispersed
Cme05g00192 Cme-Chr5:1367261 Cme07g01691 Cme-Chr7:22460299 2.75E-24 dispersed
Cme05g00193 Cme-Chr5:1368209 Cme07g01691 Cme-Chr7:22460299 4.16E-14 dispersed
Cme07g01691 Cme-Chr7:22460299 Cme08g00899 Cme-Chr8:5915372 1.80E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41673 PF05142 DUF702 4.90E-52 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01691 - - csv:101216097 448.743