Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01697 TTTTTTTTTTTTTTTTTTTTTTTTTTACTTTCTTCTCTCTCCCCTTTTCATCCTCTTCTCTGCAACCACTCTCTCTTATCCCTTTCCCCCCTGTTTTCAGGTACATTTCTTGGGATATCCCACTTTTTTTTTTCTTTCTTTTTTTTCCCTTTTAATCCCCATTTTCTCTTTTCAATTTCTTCTCTTTTCTCTCTCCTTCCGATCATGGAATGTGTTCGATTAAGCCCTCAACTCTGTTTTAATCCTCAGAATGTTGTTTCCTCTGATGATTTTTTCGTCGACCAACTCTTGGATTTGTCTGATCATGACGAATTTCTTCAAGACCAAACCCCTGATGATGATGATGATGATGATAAACCTTCTGTTTCCCTTTCCAATTTTGTTTCTGCTCAGGAAATTCATCAGGACTCCATTGTTTCCGATCTTCCTTCTTTACCTTCCAGCGAACTTACTGTTCCGGCGGATGATTTGGAGGACCTCGAATGGCTATCCCATTTTGTTGAGGATTCTTTCTCTGGATTCTCCGCTCCCTTTCCTTCTCTCATGAAATCGTCTAAGGAAATTTCAACCTTAGAGGAACAACTGGAGGATGATGGCTCTGTTTCGCCCCCGGAGCCCTGTTTCAAGACCCCCATTCCGGTTAAGGCTAGAAGCAAACGGAGGAGAACCAGCGGTCGAGTTTGGTGCCTTCGTTCACCGTCGTTGACCGATTCATCCTCTTGTTCTACAACGTCGTCCTCCTCGTCATCGCCGGCGAGTCCTTGGCTCATCATTTCCAACCGTTTCGAACCGGAAATTCCAGTCACGAAGAAAAGAAGAAGAAAGTCGCCATCAGAAAAGTCCAGAATCACCATTGGAGCACAACCGCCTCGGCGGTGCAGCCATTGCGGAGTCCAGAAAACTCCTCAATGGAGAACCGGCCCCCTCGGAGCAAAAACCCTCTGCAACGCTTGTGGCGTTCGGTTCAAATCGGGTCGACTTTTACCCGAATATCGACCCGCATGCAGTCCCACTTTCTCCAGCGAATTGCACTCCAACCACCACCGGAAAGTCCTCGAAATGCGCCGGAAAAAGGAAGTCACGGCCCCAGCCGAGTTTTTGACCGTAGAAAAAAATTAA 1119 45.84 FFFFFFFFLLSSLSPFHPLLCNHSLLSLSPLFSGTFLGISHFFFSFFFFPFNPHFLFSISSLFSLLPIMECVRLSPQLCFNPQNVVSSDDFFVDQLLDLSDHDEFLQDQTPDDDDDDDKPSVSLSNFVSAQEIHQDSIVSDLPSLPSSELTVPADDLEDLEWLSHFVEDSFSGFSAPFPSLMKSSKEISTLEEQLEDDGSVSPPEPCFKTPIPVKARSKRRRTSGRVWCLRSPSLTDSSSCSTTSSSSSSPASPWLIISNRFEPEIPVTKKRRRKSPSEKSRITIGAQPPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEVTAPAEFLTVEKN 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22530241 22531874 + MELO3C027391.2.1 Cme07g01697 333713

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01697 372 CDD ZnF_GATA 292 340 IPR000679 GO:0006355|GO:0043565
Cme07g01697 372 MobiDBLite consensus disorder prediction 193 219 - -
Cme07g01697 372 MobiDBLite consensus disorder prediction 268 291 - -
Cme07g01697 372 SMART GATA_3 287 341 IPR000679 GO:0006355|GO:0043565
Cme07g01697 372 PANTHER GATA TRANSCRIPTION FACTOR 80 361 - -
Cme07g01697 372 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 286 349 - -
Cme07g01697 372 Gene3D - 286 361 IPR013088 GO:0006355|GO:0008270
Cme07g01697 372 PANTHER GATA TRANSCRIPTION FACTOR 80 361 - -
Cme07g01697 372 Pfam GATA zinc finger 293 327 IPR000679 GO:0006355|GO:0043565
Cme07g01697 372 MobiDBLite consensus disorder prediction 233 252 - -
Cme07g01697 372 ProSiteProfiles GATA-type zinc finger domain profile. 287 323 IPR000679 GO:0006355|GO:0043565
Cme07g01697 372 ProSitePatterns GATA-type zinc finger domain. 293 318 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01697 - - - csv:101221784 528.865
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00035 Cme-Chr4:218657 Cme07g01697 Cme-Chr7:22530241 8.83E-08 dispersed
Cme04g01124 Cme-Chr4:15303307 Cme07g01697 Cme-Chr7:22530241 3.29E-42 dispersed
Cme05g00648 Cme-Chr5:6976878 Cme07g01697 Cme-Chr7:22530241 2.87E-37 dispersed
Cme07g01697 Cme-Chr7:22530241 Cme10g00074 Cme-Chr10:561751 6.76E-39 dispersed
Cme08g00904 Cme-Chr8:5943951 Cme07g01697 Cme-Chr7:22530241 2.70E-55 transposed
Cme11g00170 Cme-Chr11:1826644 Cme07g01697 Cme-Chr7:22530241 4.13E-60 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g01757 CCT,ECH 92 365 C2C2-Gata Transcription Factor Family AT5G25830 52.3 3.4e-70 262.3
Cme07g01697 . 83 365 C2C2-Gata Transcription Factor Family AT5G66320 52.2 7.4e-65 244.6
Cme08g00904 . 104 262 C2C2-Gata Transcription Factor Family AT4G36240 52.3 5.8e-40 161.4
Cme03g01757 CCT,ECH 116 365 C2C2-Gata Transcription Factor Family AT4G32890 52.6 6.5e-60 228.0
Cme04g00035 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 51.7 3.0e-134 475.7
Cme06g02531 . 40 541 C2C2-Gata Transcription Factor Family AT4G17570 53.0 8.4e-129 457.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008902 3 0 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41675 PF00320 GATA 4.90E-16 CL0167 Cme TF