Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01697 TTTTTTTTTTTTTTTTTTTTTTTTTTACTTTCTTCTCTCTCCCCTTTTCATCCTCTTCTCTGCAACCACTCTCTCTTATCCCTTTCCCCCCTGTTTTCAGGTACATTTCTTGGGATATCCCACTTTTTTTTTTCTTTCTTTTTTTTCCCTTTTAATCCCCATTTTCTCTTTTCAATTTCTTCTCTTTTCTCTCTCCTTCCGATCATGGAATGTGTTCGATTAAGCCCTCAACTCTGTTTTAATCCTCAGAATGTTGTTTCCTCTGATGATTTTTTCGTCGACCAACTCTTGGATTTGTCTGATCATGACGAATTTCTTCAAGACCAAACCCCTGATGATGATGATGATGATGATAAACCTTCTGTTTCCCTTTCCAATTTTGTTTCTGCTCAGGAAATTCATCAGGACTCCATTGTTTCCGATCTTCCTTCTTTACCTTCCAGCGAACTTACTGTTCCGGCGGATGATTTGGAGGACCTCGAATGGCTATCCCATTTTGTTGAGGATTCTTTCTCTGGATTCTCCGCTCCCTTTCCTTCTCTCATGAAATCGTCTAAGGAAATTTCAACCTTAGAGGAACAACTGGAGGATGATGGCTCTGTTTCGCCCCCGGAGCCCTGTTTCAAGACCCCCATTCCGGTTAAGGCTAGAAGCAAACGGAGGAGAACCAGCGGTCGAGTTTGGTGCCTTCGTTCACCGTCGTTGACCGATTCATCCTCTTGTTCTACAACGTCGTCCTCCTCGTCATCGCCGGCGAGTCCTTGGCTCATCATTTCCAACCGTTTCGAACCGGAAATTCCAGTCACGAAGAAAAGAAGAAGAAAGTCGCCATCAGAAAAGTCCAGAATCACCATTGGAGCACAACCGCCTCGGCGGTGCAGCCATTGCGGAGTCCAGAAAACTCCTCAATGGAGAACCGGCCCCCTCGGAGCAAAAACCCTCTGCAACGCTTGTGGCGTTCGGTTCAAATCGGGTCGACTTTTACCCGAATATCGACCCGCATGCAGTCCCACTTTCTCCAGCGAATTGCACTCCAACCACCACCGGAAAGTCCTCGAAATGCGCCGGAAAAAGGAAGTCACGGCCCCAGCCGAGTTTTTGACCGTAGAAAAAAATTAA 1119 45.84 FFFFFFFFLLSSLSPFHPLLCNHSLLSLSPLFSGTFLGISHFFFSFFFFPFNPHFLFSISSLFSLLPIMECVRLSPQLCFNPQNVVSSDDFFVDQLLDLSDHDEFLQDQTPDDDDDDDKPSVSLSNFVSAQEIHQDSIVSDLPSLPSSELTVPADDLEDLEWLSHFVEDSFSGFSAPFPSLMKSSKEISTLEEQLEDDGSVSPPEPCFKTPIPVKARSKRRRTSGRVWCLRSPSLTDSSSCSTTSSSSSSPASPWLIISNRFEPEIPVTKKRRRKSPSEKSRITIGAQPPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEVTAPAEFLTVEKN 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22530241 22531874 + MELO3C027391.2.1 Cme07g01697 333713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01697 372 CDD ZnF_GATA 292 340 IPR000679 GO:0006355|GO:0043565
Cme07g01697 372 MobiDBLite consensus disorder prediction 193 219 - -
Cme07g01697 372 MobiDBLite consensus disorder prediction 268 291 - -
Cme07g01697 372 SMART GATA_3 287 341 IPR000679 GO:0006355|GO:0043565
Cme07g01697 372 PANTHER GATA TRANSCRIPTION FACTOR 80 361 - -
Cme07g01697 372 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 286 349 - -
Cme07g01697 372 Gene3D - 286 361 IPR013088 GO:0006355|GO:0008270
Cme07g01697 372 PANTHER GATA TRANSCRIPTION FACTOR 80 361 - -
Cme07g01697 372 Pfam GATA zinc finger 293 327 IPR000679 GO:0006355|GO:0043565
Cme07g01697 372 MobiDBLite consensus disorder prediction 233 252 - -
Cme07g01697 372 ProSiteProfiles GATA-type zinc finger domain profile. 287 323 IPR000679 GO:0006355|GO:0043565
Cme07g01697 372 ProSitePatterns GATA-type zinc finger domain. 293 318 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00035 Cme-Chr4:218657 Cme07g01697 Cme-Chr7:22530241 8.83E-08 dispersed
Cme04g01124 Cme-Chr4:15303307 Cme07g01697 Cme-Chr7:22530241 3.29E-42 dispersed
Cme05g00648 Cme-Chr5:6976878 Cme07g01697 Cme-Chr7:22530241 2.87E-37 dispersed
Cme07g01697 Cme-Chr7:22530241 Cme10g00074 Cme-Chr10:561751 6.76E-39 dispersed
Cme08g00904 Cme-Chr8:5943951 Cme07g01697 Cme-Chr7:22530241 2.70E-55 transposed
Cme11g00170 Cme-Chr11:1826644 Cme07g01697 Cme-Chr7:22530241 4.13E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41675 PF00320 GATA 4.90E-16 CL0167 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01697 - - csv:101221784 528.865