Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01703 ATGCTGACAGACTTAGAAAATTCAACCGAAGTCAGTATCTCCTCCTCCGGAAATCAACTTCCGCCGCCCAAATCCGCCGTGAAAAAAAAGCGTAGTTTACCTGGAATGCCAGATCCGGATGCGGAGGTAATTGCTCTGTCTCCGAAGACTCTTTTGGCTACAAATCGATTTGTGTGTGAAATTTGCAACAAAGGGTTTCAAAGAGATCAGAATCTTCAACTTCACCGACGAGGTCATAATCTTCCATGGAAACTCCGGCAACGGACAAGCAAAGAGGTGAAAAAGAAAGTCTATGTCTGCCCGGAACCGTCATGCGTCCACCACCATCCGTCGAGAGCTCTCGGCGATCTGACTGGAATAAAGAAGCACTTCTGCCGGAAGCACGGCGAGAAGAAATGGAAGTGTGAAAAGTGCTCTAAAAAATACGCCGTCAAGTCCGATTGGAAGGCCCATTCTAAGATTTGTGGAACCAGAGAGTACAAGTGCGACTGTGAGACTGTGTTTTCGAGAAGAGATAGTTTCATCACTCACAGAGCGTTCTGTGATGTGTTGACGAAGGAAGTTGCCGGAAGTTTGTCTCCGGCAGCGGCGGAGATTCCTAATTTGGAGTCCGATCCTCAAGTTCAGCGACCGTCGGGTAGTTCGTCTCCGCCGCCTTCTGCTCCTCCTCTTCCCGCCGGTACCGCTCCCGTCCCACTAGCCCTCCCTCCATCCACTGACACGATATCATCAATCGCGTCCATTGAGAATAAAGCCTCACCGGAAAATCCTCCGCCGCCGCTTGGAGAGGCACAAGACAGAACGAGCCTAACTGGAAACTCCGGCAGCAGCAACACCACAATCAGCAGCACCAATGCTACCGTATTGGCTAGCTTGTTTGCTTCCTCTGCCGCATCACTGAGCTTACAGCCGCCGCAGCCGCCAGCATTTTGCGACTTATTACGAGCCATGGCGCGGCCCGATCGAGCGACTGAAATTGCACCGCCTTTGGTTTTTGAACCTCTTTCTCTGTGCCTATCGACCGACACTGATTCGTCCCTTTTCAGAGCCGGAATCCAAGATTGCCGCCCGTATGTCCCACCGACGCCGCCGGCCATGTCCGCCACCGGACTCCTACAGAAGGCCGCTCAAATGGGCGCTGCGGCGGCGGGCGCATCAGTGTTTCGTGGACTTGGTTTATCGTCCTCCCCTTCTTCTGCACAACAGGGGAGTTTATAA 1218 52.71 MLTDLENSTEVSISSSGNQLPPPKSAVKKKRSLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVKSDWKAHSKICGTREYKCDCETVFSRRDSFITHRAFCDVLTKEVAGSLSPAAAEIPNLESDPQVQRPSGSSSPPPSAPPLPAGTAPVPLALPPSTDTISSIASIENKASPENPPPPLGEAQDRTSLTGNSGSSNTTISSTNATVLASLFASSAASLSLQPPQPPAFCDLLRAMARPDRATEIAPPLVFEPLSLCLSTDTDSSLFRAGIQDCRPYVPPTPPAMSATGLLQKAAQMGAAAAGASVFRGLGLSSSPSSAQQGSL 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22570601 22573890 + MELO3C017545.2.1 Cme07g01703 333719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01703 405 MobiDBLite consensus disorder prediction 1 40 - -
Cme07g01703 405 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Cme07g01703 405 MobiDBLite consensus disorder prediction 212 232 - -
Cme07g01703 405 Gene3D Classic Zinc Finger 37 104 - -
Cme07g01703 405 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 4 400 - -
Cme07g01703 405 SMART c2h2final6 57 79 IPR013087 -
Cme07g01703 405 SMART c2h2final6 133 153 IPR013087 -
Cme07g01703 405 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 4 400 - -
Cme07g01703 405 MobiDBLite consensus disorder prediction 196 279 - -
Cme07g01703 405 MobiDBLite consensus disorder prediction 1 22 - -
Cme07g01703 405 SUPERFAMILY beta-beta-alpha zinc fingers 56 153 IPR036236 -
Cme07g01703 405 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Cme07g01703 405 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Cme07g01703 405 Gene3D Classic Zinc Finger 126 186 - -
Cme07g01703 405 MobiDBLite consensus disorder prediction 237 251 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01971 Cme-Chr3:27590275 Cme07g01703 Cme-Chr7:22570601 1.95E-113 dispersed
Cme07g01703 Cme-Chr7:22570601 Cme11g00875 Cme-Chr11:11738322 4.85E-112 dispersed
Cme07g01703 Cme-Chr7:22570601 Cme08g00831 Cme-Chr8:5504754 3.92E-159 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41676 PF00096 zf-C2H2 0.0039 CL0361 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01703 K25869 - csv:101215476 672.544