Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01715 ATGAGTTCAAGCGATGGTGAGAGTTCTCCAGGGCCGGACTCTCAATCTTCACCTGCCGCTCCATCCCCAGATTCGTCGTCTCCGTCATCACCTGATCCACCGTCGCAGAAATCGCCGCCGTTGCCATCGCCACCGTCTCCCGATGCCAATTCCGATTTCTCTCCTCCACCATCTCCAGAAAACGATGGCTCTTCCAATAATTCCTCACCACCACCACCCCCATCAGATAATTCTTCTCCATCTCCAAAGTCCCCATCCGATGGTTCTTCCAATGATCAAAAATCCCCTCCAGCTCCAAAAGAGGGTAGCCCCCGGACGTCACCCGTTGCTCATTCTCCTCCATCCCGATCTTCGTCACCGGGACATGAATTTTCTCCACCAGCTCTGCCGGAAGGAAAGGCATCACCAAGATCGCCAGCTAGACAACATGCAGAGAAGGATTCATCGCCATCGGAGATCAACCCGGGGATTATAATTGGAGTGGCAGTGGGGGTGGGCGTTTTCATAATTGTTCTCATATCACTTATTGCAGTTTGTTCAAAGAAGAAGAAGAGAAAGAGAGAACCTATGCCATATTATGGAGATCATGGTCATGGAGGACCTAAAAGTGGTGACTATTACAACAGTACACAGCAACAACAAAACTGGCACAACGGCATGCACGGTCCCGGGACAGATCAATTTGGGAGGCCTCCGGTATCGGGGTCTTCGCCGGGGCCGGGTGGGTGGCCAATGAGCGGCGAGAACATGACGACAGGTAGCTCCTATGCAGGGCCTCCTCTTCCTCCACCATCACCATCGATTGCATTTGGGTTCAACAAGAGCACGTTCACGTACGACGAACTTGCTGCAGCTACGGGTGGGTTTGCTCATGCAAACCTACTCGGGCAGGGTGGATTCGGTTATGTGCACAAGGGGGTACTGCCCAATGGGAAGGAGGTGGCAGTGAAAAGCTTGAAGGTGGGCAGTGGGCAGGGTGAGAGGGAGTTCATGGCTGAAGTTGAGATTATTAGTAGAGTCCATCATCGGCATTTGGTGTCTTTGGTTGGGTTTTGCATTGCTGGTGGACAAAGAATGTTGGTTTATGAGTTTGTTCCTAACAATACATTGGAGCATCATCTTCATGGCAAAGGTCTTCCAGTAATGGATTGGTCGACTAGACTTCGCATTGCCATAGGTTCTGCCAAGGGACTTGCTTATCTTCATGAAGATTGTCATCCGAAGATTATTCATCGAGATATCAAGTCAGCTAATATTCTGATTGATGCCAATTTTGAAGCTATGGTGGCTGATTTTGGATTGGCTAAGTTGTCTACGGATAATCACACACACGTCTCGACTAGAGTCATGGGTACATTCGGGTATTTGGCACCAGAATATGCATCAAGTGGAAAACTAACAGAGAAATCTGATGTGTTCTCGTTCGGTGTAATGTTATTGGAACTCATTACAGGAAAACGTCCCGTAGATCCTACTCATACCATGGATGACAGTTTAGTTGATTGGGCTCGACCACTAATGACTCGAGCATTAATGGATGGAACATACGATGAGTTGGTGGATATACGTTTGGAGAAAGATTTCAACACACAAGAAATGGCTCGAATGGTGGCTTGTGCTGCAGCCTCCATACGCCACTCGGCTAGAAAGCGGCCAAAAATGAGCCAAGTGGTTCGAGCCTTAGAAGGAGACGTGTCATTGGACGACTTAAACGAAGGCATAAGACCAGGGCAAAGCTCCATCTTTAGCGCCGCTAGCTCCGACTACGACTCCAATGCCTACCAAGCCGACATGTCAAAATTCAGGAAGATCGCTTTGTCGGACGACAGCAGTGAGCACGCGACTTCAAGCAACGATTCCCGAGAAATGAACCATCCCGGCCCCGGGACGACCCAAAGGCCGCTCTTTTAA 1911 49.5 MSSSDGESSPGPDSQSSPAAPSPDSSSPSSPDPPSQKSPPLPSPPSPDANSDFSPPPSPENDGSSNNSSPPPPPSDNSSPSPKSPSDGSSNDQKSPPAPKEGSPRTSPVAHSPPSRSSSPGHEFSPPALPEGKASPRSPARQHAEKDSSPSEINPGIIIGVAVGVGVFIIVLISLIAVCSKKKKRKREPMPYYGDHGHGGPKSGDYYNSTQQQQNWHNGMHGPGTDQFGRPPVSGSSPGPGGWPMSGENMTTGSSYAGPPLPPPSPSIAFGFNKSTFTYDELAAATGGFAHANLLGQGGFGYVHKGVLPNGKEVAVKSLKVGSGQGEREFMAEVEIISRVHHRHLVSLVGFCIAGGQRMLVYEFVPNNTLEHHLHGKGLPVMDWSTRLRIAIGSAKGLAYLHEDCHPKIIHRDIKSANILIDANFEAMVADFGLAKLSTDNHTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDPTHTMDDSLVDWARPLMTRALMDGTYDELVDIRLEKDFNTQEMARMVACAAASIRHSARKRPKMSQVVRALEGDVSLDDLNEGIRPGQSSIFSAASSDYDSNAYQADMSKFRKIALSDDSSEHATSSNDSREMNHPGPGTTQRPLF 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22658448 22662934 + MELO3C017557.2.1 Cme07g01715 333731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01715 636 MobiDBLite consensus disorder prediction 184 260 - -
Cme07g01715 636 CDD STKc_IRAK 295 563 - -
Cme07g01715 636 MobiDBLite consensus disorder prediction 81 97 - -
Cme07g01715 636 Pfam Protein tyrosine and serine/threonine kinase 293 559 IPR001245 GO:0004672|GO:0006468
Cme07g01715 636 ProSiteProfiles Protein kinase domain profile. 289 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g01715 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672|GO:0006468
Cme07g01715 636 MobiDBLite consensus disorder prediction 605 619 - -
Cme07g01715 636 ProSitePatterns Protein kinases ATP-binding region signature. 295 317 IPR017441 GO:0005524
Cme07g01715 636 MobiDBLite consensus disorder prediction 1 23 - -
Cme07g01715 636 MobiDBLite consensus disorder prediction 605 636 - -
Cme07g01715 636 SMART serkin_6 289 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g01715 636 MobiDBLite consensus disorder prediction 1 154 - -
Cme07g01715 636 MobiDBLite consensus disorder prediction 66 80 - -
Cme07g01715 636 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 29 613 - -
Cme07g01715 636 MobiDBLite consensus disorder prediction 108 122 - -
Cme07g01715 636 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 29 613 - -
Cme07g01715 636 SUPERFAMILY Protein kinase-like (PK-like) 263 561 IPR011009 -
Cme07g01715 636 Gene3D Phosphorylase Kinase; domain 1 265 364 - -
Cme07g01715 636 MobiDBLite consensus disorder prediction 204 221 - -
Cme07g01715 636 Gene3D Transferase(Phosphotransferase) domain 1 365 572 - -
Cme07g01715 636 MobiDBLite consensus disorder prediction 24 54 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01367 Cme-Chr2:19773821 Cme07g01715 Cme-Chr7:22658448 0 dispersed
Cme05g01976 Cme-Chr5:28312913 Cme07g01715 Cme-Chr7:22658448 0 dispersed
Cme07g01715 Cme-Chr7:22658448 Cme10g00523 Cme-Chr10:3371185 1.34E-165 dispersed
Cme11g00187 Cme-Chr11:2262590 Cme07g01715 Cme-Chr7:22658448 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65028 PF07714 PK_Tyr_Ser-Thr 4.80E-46 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01715 - - csv:101214995 976.852