Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01729 ATGAGCGGCCAGAAACGAAACTTCACGACCACCACCGCCGTCGTCAGCCCTGTTGGAAGCCCTACCTCCGGCAACATCTCCGACAGCTCAACGAAAGAACAAGACAGGTTTCTTCCGATCGCAAACGTGAGCCGAATCATGAAGAAATCTCTTCCGGCTAACGCGAAAATCTCGAAAGATGCTAAAGAAACAGTCCAAGAATGTGTGTCGGAGTTCATCAGCTTCATCACCGGGGAAGCCTCCGACAAGTGTCAAAGGGAAAAACGGAAGACGATCAACGGAGACGATTTGCTGTGGGCTATGACTACTTTAGGGTTCGAGAATTACGTCGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAAGAAAAACATTCTTTAGCTAGACAAGAGGATCCTTCTTTGTCTCCGGCAAAATCATCCGCTGAACACATTATTGGAGGGAAATCGGCGAACTCGGTGATGGATTTTCAGAATTTCAATTCTGGGTTTTATTCATTGGGGAATCAAATTCAAAGTCAGGGAAGTCAGAAGAGTTTCAACATAATCGATGGCGTTGGATTTGGGGAAAATTTGAGGGGTTTCAATATAAATGGAGTTCATGAAAATGGAGAAGGGAATCGAGCTCGAGCCATGGCGGCTCATCTTCAACAGAGCTCCGGTTGGTGA 678 46.02 MSGQKRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQEDPSLSPAKSSAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQSQGSQKSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22788772 22789581 - MELO3C017568.2.1 Cme07g01729 333745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01729 225 MobiDBLite consensus disorder prediction 127 146 - -
Cme07g01729 225 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 20 184 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cme07g01729 225 Gene3D Histone, subunit A 24 149 IPR009072 GO:0046982
Cme07g01729 225 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 20 184 - -
Cme07g01729 225 PRINTS CCAAT-binding transcription factor subunit A signature 65 83 - -
Cme07g01729 225 PRINTS CCAAT-binding transcription factor subunit A signature 84 102 - -
Cme07g01729 225 PRINTS CCAAT-binding transcription factor subunit A signature 103 121 - -
Cme07g01729 225 MobiDBLite consensus disorder prediction 1 33 - -
Cme07g01729 225 ProSitePatterns NF-YB/HAP3 subunit signature. 68 84 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cme07g01729 225 SUPERFAMILY Histone-fold 34 136 IPR009072 GO:0046982
Cme07g01729 225 Coils Coil 113 133 - -
Cme07g01729 225 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 37 101 IPR003958 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02771 Cme-Chr6:34982615 Cme07g01729 Cme-Chr7:22788772 7.99E-47 dispersed
Cme07g01729 Cme-Chr7:22788772 Cme11g00968 Cme-Chr11:13736069 6.71E-64 dispersed
Cme07g01729 Cme-Chr7:22788772 Cme04g02561 Cme-Chr4:31731751 2.12E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41683 PF00808 CBFD_NFYB_HMF 3.70E-27 CL0012 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01729 K08065 - csv:101214273 439.499