Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01729 ATGAGCGGCCAGAAACGAAACTTCACGACCACCACCGCCGTCGTCAGCCCTGTTGGAAGCCCTACCTCCGGCAACATCTCCGACAGCTCAACGAAAGAACAAGACAGGTTTCTTCCGATCGCAAACGTGAGCCGAATCATGAAGAAATCTCTTCCGGCTAACGCGAAAATCTCGAAAGATGCTAAAGAAACAGTCCAAGAATGTGTGTCGGAGTTCATCAGCTTCATCACCGGGGAAGCCTCCGACAAGTGTCAAAGGGAAAAACGGAAGACGATCAACGGAGACGATTTGCTGTGGGCTATGACTACTTTAGGGTTCGAGAATTACGTCGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAAGAAAAACATTCTTTAGCTAGACAAGAGGATCCTTCTTTGTCTCCGGCAAAATCATCCGCTGAACACATTATTGGAGGGAAATCGGCGAACTCGGTGATGGATTTTCAGAATTTCAATTCTGGGTTTTATTCATTGGGGAATCAAATTCAAAGTCAGGGAAGTCAGAAGAGTTTCAACATAATCGATGGCGTTGGATTTGGGGAAAATTTGAGGGGTTTCAATATAAATGGAGTTCATGAAAATGGAGAAGGGAATCGAGCTCGAGCCATGGCGGCTCATCTTCAACAGAGCTCCGGTTGGTGA 678 46.02 MSGQKRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQEDPSLSPAKSSAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQSQGSQKSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22788772 22789581 - MELO3C017568.2.1 Cme07g01729 333745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01729 225 MobiDBLite consensus disorder prediction 127 146 - -
Cme07g01729 225 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 20 184 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cme07g01729 225 Gene3D Histone, subunit A 24 149 IPR009072 GO:0046982
Cme07g01729 225 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 20 184 - -
Cme07g01729 225 PRINTS CCAAT-binding transcription factor subunit A signature 65 83 - -
Cme07g01729 225 PRINTS CCAAT-binding transcription factor subunit A signature 84 102 - -
Cme07g01729 225 PRINTS CCAAT-binding transcription factor subunit A signature 103 121 - -
Cme07g01729 225 MobiDBLite consensus disorder prediction 1 33 - -
Cme07g01729 225 ProSitePatterns NF-YB/HAP3 subunit signature. 68 84 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cme07g01729 225 SUPERFAMILY Histone-fold 34 136 IPR009072 GO:0046982
Cme07g01729 225 Coils Coil 113 133 - -
Cme07g01729 225 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 37 101 IPR003958 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01729 K08065 NFYB, HAP3; nuclear transcription Y subunit beta - csv:101214273 439.499
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02771 Cme-Chr6:34982615 Cme07g01729 Cme-Chr7:22788772 7.99E-47 dispersed
Cme07g01729 Cme-Chr7:22788772 Cme11g00968 Cme-Chr11:13736069 6.71E-64 dispersed
Cme07g01729 Cme-Chr7:22788772 Cme04g02561 Cme-Chr4:31731751 2.12E-58 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme06g02771 . 9 149 CCAAT-HAP3 Transcription Factor Family AT5G47670 65.2 7.4e-48 187.6
Cme11g00968 CCT,ECH 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 7.0e-38 154.5
Cme06g02771 . 33 171 CCAAT-HAP3 Transcription Factor Family AT1G21970 67.3 1.4e-49 193.4
Cme07g01729 . 10 138 CCAAT-HAP3 Transcription Factor Family AT1G21970 54.9 8.4e-39 157.5
Cme11g00968 CCT,ECH 1 129 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.2 3.5e-57 218.0
Cme06g02755 . 1 120 CCAAT-HAP3 Transcription Factor Family AT4G14540 80.2 3.5e-49 191.4
Cme07g01729 . 29 135 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.0 2.5e-47 185.3
Cme04g02561 . 22 115 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.2 1.3e-43 172.9
Cme10g00818 . 11 120 CCAAT-HAP3 Transcription Factor Family AT4G14540 74.5 8.5e-43 170.2
Cme01g02349 . 46 141 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.9 1.8e-37 152.5
Cme10g00818 . 1 121 CCAAT-HAP3 Transcription Factor Family AT2G38880 77.7 3.4e-49 191.4
Cme04g02561 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 2.9e-48 188.3
Cme11g00968 CCT,ECH 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 1.4e-42 169.5
Cme06g02755 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 71.2 8.9e-42 166.8
Cme07g01729 . 16 122 CCAAT-HAP3 Transcription Factor Family AT2G38880 74.8 8.9e-42 166.8
Cme01g02349 . 42 137 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.9 2.7e-38 155.2
Cme01g02349 . 44 141 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.7 9.9e-44 173.3
Cme06g02755 . 19 129 CCAAT-HAP3 Transcription Factor Family AT2G47810 68.5 1.1e-39 159.8
Cme11g00968 CCT,ECH 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 5.6e-39 157.5
Cme07g01729 . 32 140 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.0 1.4e-37 152.9
Cme10g00818 . 1 137 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.3 2.3e-54 208.8
Cme04g02561 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G37060 84.9 1.7e-49 192.6
Cme11g00968 CCT,ECH 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 1.3e-44 176.4
Cme07g01729 . 31 136 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.5 1.7e-41 166.0
Cme06g02755 . 6 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.5 6.5e-41 164.1
Cme01g02349 . 45 147 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 7.5e-37 150.6
Cme07g01729 . 19 134 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.2 4.1e-45 178.3
Cme11g00968 CCT,ECH 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 3.5e-44 175.3
Cme04g02561 . 7 116 CCAAT-HAP3 Transcription Factor Family AT2G13570 70.4 7.3e-42 167.5
Cme06g02755 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.2 2.1e-41 166.0
Cme01g02349 . 22 146 CCAAT-HAP3 Transcription Factor Family AT2G13570 63.2 2.0e-39 159.5
Cme10g00818 . 28 128 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.3 5.8e-39 157.9
Cme11g00968 CCT,ECH 1 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.4 5.3e-52 201.1
Cme06g02755 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.5 4.9e-50 194.5
Cme07g01729 . 27 134 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.6 2.1e-45 179.1
Cme10g00818 . 14 140 CCAAT-HAP3 Transcription Factor Family AT5G47640 67.9 2.4e-44 175.6
Cme04g02561 . 11 115 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.2 6.5e-42 167.5
Cme01g02349 . 46 142 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.3 1.1e-38 156.8
Cme10g00818 . 12 137 CCAAT-HAP3 Transcription Factor Family AT3G53340 81.7 6.8e-54 207.2
Cme04g02561 . 12 115 CCAAT-HAP3 Transcription Factor Family AT3G53340 89.6 1.1e-48 189.9
Cme11g00968 CCT,ECH 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 2.6e-45 178.7
Cme06g02755 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.4 1.3e-41 166.4
Cme07g01729 . 20 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 75.2 2.3e-41 165.6
Cme01g02349 . 45 147 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.9 1.5e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010325 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 0 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41683 PF00808 CBFD_NFYB_HMF 3.70E-27 CL0012 Cme TF