Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme07g01729 | ATGAGCGGCCAGAAACGAAACTTCACGACCACCACCGCCGTCGTCAGCCCTGTTGGAAGCCCTACCTCCGGCAACATCTCCGACAGCTCAACGAAAGAACAAGACAGGTTTCTTCCGATCGCAAACGTGAGCCGAATCATGAAGAAATCTCTTCCGGCTAACGCGAAAATCTCGAAAGATGCTAAAGAAACAGTCCAAGAATGTGTGTCGGAGTTCATCAGCTTCATCACCGGGGAAGCCTCCGACAAGTGTCAAAGGGAAAAACGGAAGACGATCAACGGAGACGATTTGCTGTGGGCTATGACTACTTTAGGGTTCGAGAATTACGTCGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAAGAAAAACATTCTTTAGCTAGACAAGAGGATCCTTCTTTGTCTCCGGCAAAATCATCCGCTGAACACATTATTGGAGGGAAATCGGCGAACTCGGTGATGGATTTTCAGAATTTCAATTCTGGGTTTTATTCATTGGGGAATCAAATTCAAAGTCAGGGAAGTCAGAAGAGTTTCAACATAATCGATGGCGTTGGATTTGGGGAAAATTTGAGGGGTTTCAATATAAATGGAGTTCATGAAAATGGAGAAGGGAATCGAGCTCGAGCCATGGCGGCTCATCTTCAACAGAGCTCCGGTTGGTGA | 678 | 46.02 | MSGQKRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQEDPSLSPAKSSAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQSQGSQKSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW | 225 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 22788772 | 22789581 | - | MELO3C017568.2.1 | Cme07g01729 | 333745 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme07g01729 | 225 | MobiDBLite | consensus disorder prediction | 127 | 146 | - | - | |
Cme07g01729 | 225 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 20 | 184 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
Cme07g01729 | 225 | Gene3D | Histone, subunit A | 24 | 149 | IPR009072 | GO:0046982 | |
Cme07g01729 | 225 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 | 20 | 184 | - | - | |
Cme07g01729 | 225 | PRINTS | CCAAT-binding transcription factor subunit A signature | 65 | 83 | - | - | |
Cme07g01729 | 225 | PRINTS | CCAAT-binding transcription factor subunit A signature | 84 | 102 | - | - | |
Cme07g01729 | 225 | PRINTS | CCAAT-binding transcription factor subunit A signature | 103 | 121 | - | - | |
Cme07g01729 | 225 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Cme07g01729 | 225 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 68 | 84 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Cme07g01729 | 225 | SUPERFAMILY | Histone-fold | 34 | 136 | IPR009072 | GO:0046982 | |
Cme07g01729 | 225 | Coils | Coil | 113 | 133 | - | - | |
Cme07g01729 | 225 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 37 | 101 | IPR003958 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme06g02771 | Cme-Chr6:34982615 | Cme07g01729 | Cme-Chr7:22788772 | 7.99E-47 | dispersed | |
Cme07g01729 | Cme-Chr7:22788772 | Cme11g00968 | Cme-Chr11:13736069 | 6.71E-64 | dispersed | |
Cme07g01729 | Cme-Chr7:22788772 | Cme04g02561 | Cme-Chr4:31731751 | 2.12E-58 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41683 | PF00808 | CBFD_NFYB_HMF | 3.70E-27 | CL0012 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme07g01729 | K08065 | - | csv:101214273 | 439.499 |