Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01730 ATGAAGAAACGGCTATATGGGGCTTTGGTTTTGCTCTGGTTCATCTTTGTCGGGCAATTTTGTACCAATGTATCTGCAACTGTAGAAGCTACTGTTCTGCATATATTTCGATTGAATTTGGAAGATCCAAACAATGTTCTGCAGAGTTGGGACCCTACACTTGTTAATCCCTGCACTTGGTTTCATGTCACTTGCAACAATGAAAATAACATTATAAGAGTTGACCTTGGAAATGCTGGATTGTCTGGTAAATTAGTACCACAGCTTGGTCAACTTAAAAGTCTTCAATACTTGGAGCTTTATGGTAACAACATAAGTGGAGAGATTCCAGATGATCTCGGGAACCTAGAAAATTTGGTGAGCCTAGACCTTTACTTGAACGGTTTAACTGGCCCAATTCCAGACACGTTTGGGAAGCTCACACAATTGCGTTTCCTTCGGCTAAACGACAACAAACTATCTGGCTTGATACCAATTTCCTTGACAAATATTTCCACCCTGCAAGTCTTGGATCTATCAAACAACCTTCTATCTGGAAAAGTTCCAAATAATGGCTCATTTTCACTATTTACTCCCATAAGTTTTGCAAATAACTTGGATCTATGTGGTTTGGTAACTGGGAAGCCTTGTCCTGGGGATCCTCCCTTTTCTCCGCCACCACCATTTGTTCCACAGTCAACAGTTTCTTCCCATGAATTAAACAATCCCAATGGAGCAATTGTTGGAGGAGTTGCTGCAGGTGCTGCTTTACTTTTTGCTACACCGGCTATCATATTTGTCTATTGGCATCGGAGGAGATCACGAGATATATTCTTCGATGTGCCTGCGGAAGAAGATTCAGAGATCAACTTGGGGCAGCTGAAACGGTTTTCTCTGAGAGACTTACAAGTTGCAACAGATAACTTCTGCAACAAAAATATTCTTGGTCGAGGTGGATTCGGTAAAGTCTATAGGGGGCGTTTGGCTGATGGCTCGTTAGTAGCAGTAAAAAGGCTCAAAGAAGAGCGTACGCCAGGTGGAGAGTTACAGTTCCAAACAGAAGTAGAGATGATTAGCATGGCAGTGCATCGAAATCTTCTTCGACTACATGGATTTTGTACAACGTCGAGTGAACGACTCCTTGTTTATCCTTATATGGCCAACGGAAGTGTTGCATCATGTTTAAGAGAACGTCCACAATCCGAAGCTCCTCTTGACTGGCCAACTCGAAAGAAAGTTGCATTAGGCTCTGCGAGGGGCCTTTCTTATTTACATGATGGATGTGATCCAAAAATCATCCATCGTGATGTGAAGGCTGCAAATATTCTACTAGATGAGGAATTCGAGGCTGTTGTGGGTGATTTTGGTCTTGCAAAGTTAATGGACTACAAGGATACTCATGTTACAACAGCCGTAAGAGGTACAATTGGGCATATAGCTCCAGAGTATCTCTCAACTGGGAAATCATCTGAAAAGACTGATGTCTTTGGTTATGGCATTATGCTTTTGGAGCTAATAACCGGACAAAGGGCTTTCGATCTTGCTCGACTGGCAAACGATGAAGATGTCATGCTGCTTGATTGGGTCAAAGGCCTTTTGAAAGAGAAAAAGTTGGAGATGTTGGTTGATCCTGATTTGAAGGACAACTATGATGAGATTGAAGTTGAGCAAATAATCCAAGTAGCACTTCTCTGCACACAGAGCTTGCCTATGGAACGACCCAAAATGTCTGATGTGGTCAGAATGCTTGAAGGAGATGGCTTGGCTGAGCGATGGGAGGAATGGCAGCGAGTCGAGGTAGTTTACCATGAAACCGAATTGACATCTTCTCAAACTTCTGAATGGATGGTTGATTCAACTGAAAACGTTCGTGCTTTTGAATTATCTGGTCCTAGATAA 1878 42.44 MKKRLYGALVLLWFIFVGQFCTNVSATVEATVLHIFRLNLEDPNNVLQSWDPTLVNPCTWFHVTCNNENNIIRVDLGNAGLSGKLVPQLGQLKSLQYLELYGNNISGEIPDDLGNLENLVSLDLYLNGLTGPIPDTFGKLTQLRFLRLNDNKLSGLIPISLTNISTLQVLDLSNNLLSGKVPNNGSFSLFTPISFANNLDLCGLVTGKPCPGDPPFSPPPPFVPQSTVSSHELNNPNGAIVGGVAAGAALLFATPAIIFVYWHRRRSRDIFFDVPAEEDSEINLGQLKRFSLRDLQVATDNFCNKNILGRGGFGKVYRGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLHGFCTTSSERLLVYPYMANGSVASCLRERPQSEAPLDWPTRKKVALGSARGLSYLHDGCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDEDVMLLDWVKGLLKEKKLEMLVDPDLKDNYDEIEVEQIIQVALLCTQSLPMERPKMSDVVRMLEGDGLAERWEEWQRVEVVYHETELTSSQTSEWMVDSTENVRAFELSGPR 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22801598 22805952 + MELO3C017569.2.1 Cme07g01730 333746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01730 625 SUPERFAMILY Protein kinase-like (PK-like) 282 577 IPR011009 -
Cme07g01730 625 Gene3D Transferase(Phosphotransferase) domain 1 379 596 - -
Cme07g01730 625 ProSiteProfiles Protein kinase domain profile. 302 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g01730 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Cme07g01730 625 Pfam Leucine rich repeat N-terminal domain 32 66 IPR013210 -
Cme07g01730 625 Pfam Protein tyrosine and serine/threonine kinase 305 576 IPR001245 GO:0004672|GO:0006468
Cme07g01730 625 SMART serkin_6 302 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g01730 625 SUPERFAMILY L domain-like 29 195 - -
Cme07g01730 625 Gene3D Ribonuclease Inhibitor 26 212 IPR032675 -
Cme07g01730 625 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 625 - -
Cme07g01730 625 PANTHER - 10 625 - -
Cme07g01730 625 Gene3D Phosphorylase Kinase; domain 1 271 378 - -
Cme07g01730 625 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00892 Cme-Chr3:16958995 Cme07g01730 Cme-Chr7:22801598 0 dispersed
Cme07g01180 Cme-Chr7:15868183 Cme07g01730 Cme-Chr7:22801598 0 dispersed
Cme07g01514 Cme-Chr7:20996417 Cme07g01730 Cme-Chr7:22801598 2.30E-107 dispersed
Cme07g01730 Cme-Chr7:22801598 Cme10g00319 Cme-Chr10:2096713 0 dispersed
Cme11g00012 Cme-Chr11:141851 Cme07g01730 Cme-Chr7:22801598 4.00E-180 dispersed
Cme12g01746 Cme-Chr12:24175729 Cme07g01730 Cme-Chr7:22801598 5.34E-110 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65029 PF00069 Pkinase 3.90E-43 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01730 K13418 - csv:101208905 1124.0