Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01733 ATGAACTCATCATCCACTAAATTTTACAATCCAGGAAGGATGGGATTGTATGAACCTATCCACCATATTGGAATGTGGGGTGAAACTTTTAGAACCAATGCCGATTTAGATCCCCCGTCCTCTTTTATCATCGAAACCGATCCCAAACTAGAAAATCAGTCAGATGATGCTTCACTCGGTTCACTTGGAGATCCTCATGTATATGACCAAGATGACACTAAACGCATCGATAAGATTCAAAGAAGGCTGGCACAAAATCGGGAAGCAGCTCGCAAAAGTCGCCTACGGAAAAAGGCTTATATTAAGCAATTGGAAACAAGCCGCATAAAGCTCATTCAATTGGAGCAAGAACTTGAAAAGGCAAGACAACAAGGTCTTTTGGCTGGATCCCGATTTGATAATAACCAATCGGGTTTATCAGGAACCACAAATTCAGGCATCTTCGCATTTGAATCAGAGTATGAGCAATGGGTGGAAGAGCAGAACAGGCAGATTTGTGATCTGAGGACTGCTGTGCATGCTGATATTACTGATATCGAGCTTCGAATACTCGTGGAAAATGCAATGAGACATTACTTTAAATTTTTTCGCATGAAAGCTAAGGCTGCAAAAGCCGATGTCTCTTACATAATGTCAGGCATGTGGAAGACATCCGCCGAAAGACTTTTCTTATGGATAGGAGGATTTCGCCCTTCAGAACTTCTCAAGGTTTTGATACCTCAGCTGGAGACATTAACCGAACAACAAATTTCGGAAACGGGCAGCCTTAGAAAATCGTGTCTACAGGCAGAAGATGCTCTTAGACAAGGTATGGAAAAACTACAACAAAATCTATTTGAGAGCGTTGTGGCTGGTCAGCTAGGTGAAGGAAGTTATCCCCTACAGATGACTGCTGCGATGGAGAGATTAGAAGCGCTCGTTAGCTTTGTGAATCAGGCTGACCATCTACGACAGGAAACATTGCAACAGATGTACAAAATTCTAACGACTCGGCAATCTGCTCAAGGCCTTCTTACACTGGGGGAGTTTTTCCAACGACTCCGAGCATTGAGCTCACTTTGGGGTAATCGTCCTTGTGAGCCTGCATAG 1089 43.34 MNSSSTKFYNPGRMGLYEPIHHIGMWGETFRTNADLDPPSSFIIETDPKLENQSDDASLGSLGDPHVYDQDDTKRIDKIQRRLAQNREAARKSRLRKKAYIKQLETSRIKLIQLEQELEKARQQGLLAGSRFDNNQSGLSGTTNSGIFAFESEYEQWVEEQNRQICDLRTAVHADITDIELRILVENAMRHYFKFFRMKAKAAKADVSYIMSGMWKTSAERLFLWIGGFRPSELLKVLIPQLETLTEQQISETGSLRKSCLQAEDALRQGMEKLQQNLFESVVAGQLGEGSYPLQMTAAMERLEALVSFVNQADHLRQETLQQMYKILTTRQSAQGLLTLGEFFQRLRALSSLWGNRPCEPA 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22818008 22824040 - MELO3C017572.2.1 Cme07g01733 333749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01733 362 Pfam bZIP transcription factor 77 111 IPR004827 GO:0003700|GO:0006355
Cme07g01733 362 PANTHER TRANSCRIPTION FACTOR TGA1 1 361 - -
Cme07g01733 362 Coils Coil 97 124 - -
Cme07g01733 362 Gene3D - 77 127 - -
Cme07g01733 362 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 120 IPR004827 GO:0003700|GO:0006355
Cme07g01733 362 PANTHER TRANSCRIPTION FACTOR TGA9 1 361 - -
Cme07g01733 362 ProSiteProfiles DOG1 domain profile. 147 357 IPR025422 GO:0006351|GO:0043565
Cme07g01733 362 Pfam Seed dormancy control 164 239 IPR025422 GO:0006351|GO:0043565
Cme07g01733 362 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Cme07g01733 362 SMART brlzneu 74 136 IPR004827 GO:0003700|GO:0006355
Cme07g01733 362 MobiDBLite consensus disorder prediction 50 69 - -
Cme07g01733 362 SUPERFAMILY Leucine zipper domain 79 120 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00059 Cme-Chr3:844599 Cme07g01733 Cme-Chr7:22818008 2.29E-109 dispersed
Cme07g01733 Cme-Chr7:22818008 Cme10g00013 Cme-Chr10:143381 2.34E-104 dispersed
Cme08g00219 Cme-Chr8:1473080 Cme07g01733 Cme-Chr7:22818008 5.41E-09 dispersed
Cme08g01803 Cme-Chr8:21006186 Cme07g01733 Cme-Chr7:22818008 7.23E-15 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41685 PF14144 DOG1 1.80E-28 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01733 K14431 - csv:116401613 701.819