Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01755 ATGGTGGAGTTCCATGGAGAAATCCGATCCCATAACAACGATGAAGACGACCGAGATCAAGAACCAGAAGAGGAAATTAGCTACGATGATCTCAAGAAACGAATGTGGAGAGATCGACAACGGTTGAAGAAGATGAAGGAGAGGCATGATGAAGAAGAGCCTGAATCTGCTGCAAGAGAAGAAGCTTCTCGCCGGAAGAAAATGGCTCGAGCTCAAGATTCCATTCTTAAGTGCATGGATAAAATCATGGAAGCTTGTAAAGCTCAAGGGTTTGTTTATGGAATCGTTCCGGAAAAAGGAAAACCGGTCACTGGTTCTTCCGAGAGCCTCCGTGAATGGTGGAAAGATGATGTCCGATTCGAACAAGATGCTCCGATGGCCATAGCGAAATTTCTCCCCAAAGTAATTGAAGAATCAGGAATCGATCCCAATTCGTTTTTGCATTTACTCACCGATTTACAGGACACAACATTGGGATCCATTCTCTCCGCCTTGATGCAGCACTGTATTCCTCCACAGAGGAAATTCCCATTGGAAAAGGGTTTAGCGCCGCCATGGTGGCCGACGGGTAACGAGCTTTGTGTCTTGGCGGCGGTGATTAAACACATGTTACCTGATTTAGACAACATGAGGAAATTAATTCGGCAATCGAAGAATTTACAAGCGAAAATGACAGCGAAAGAGACACTCACTTGGGCTAAAGTTGTGAATCAAGAAGAAGCTCTGTTAAAATTAACAAAAAAGAGCTTAAGAATCACCGACGAAGAAGAAGAAGAAGAAGAACACAACAAAAACAGAGATAAACAGTGCAGCGATGAAATTATGACGAAACGAAAGTGTGTATCCGAACAAGAACCCATATCGGATTCGATGTTATACCCTTGCCAGAATCAATGGTGTCCACAGAGTGAAGTGCTAATGGGATTTATAGACAAGAGAGCAAGAACAGAGCATGAGACACAGTGCATTTGCAGAGGAGAGAGGTCAGAGGAATTCTCGGACGAGCAATCGATAGACACACATTTGAAGAGCGTGGTGGAGTGGATGAACTGGGAGCTGGGGAGGGCGGAGGCGGGGAGTGAGGAGGCGAGGATAGAAGATGCCGGAGATGGGTCGGGGAGCAGCACGGTGGAGGATTACGGGAGTGGATACTGGAATATGGATCTGAATGCGAGTCCCGGGGAGGATTTGAGTGGGCAACAACAAGATGCTACTTCTATTTGGGATTTGAGATATGAATGGGGAGCTGAAGAATGA 1257 45.82 MVEFHGEIRSHNNDEDDRDQEPEEEISYDDLKKRMWRDRQRLKKMKERHDEEEPESAAREEASRRKKMARAQDSILKCMDKIMEACKAQGFVYGIVPEKGKPVTGSSESLREWWKDDVRFEQDAPMAIAKFLPKVIEESGIDPNSFLHLLTDLQDTTLGSILSALMQHCIPPQRKFPLEKGLAPPWWPTGNELCVLAAVIKHMLPDLDNMRKLIRQSKNLQAKMTAKETLTWAKVVNQEEALLKLTKKSLRITDEEEEEEEHNKNRDKQCSDEIMTKRKCVSEQEPISDSMLYPCQNQWCPQSEVLMGFIDKRARTEHETQCICRGERSEEFSDEQSIDTHLKSVVEWMNWELGRAEAGSEEARIEDAGDGSGSSTVEDYGSGYWNMDLNASPGEDLSGQQQDATSIWDLRYEWGAEE 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23062323 23063680 + MELO3C017592.2.1 Cme07g01755 333771

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01755 418 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 14 413 IPR006957 GO:0005634
Cme07g01755 418 MobiDBLite consensus disorder prediction 43 66 - -
Cme07g01755 418 MobiDBLite consensus disorder prediction 1 30 - -
Cme07g01755 418 SUPERFAMILY DNA-binding domain of EIN3-like 147 243 IPR023278 GO:0003700|GO:0005634
Cme07g01755 418 PANTHER ETHYLENE INSENSITIVE 3-LIKE 5 PROTEIN 14 413 - -
Cme07g01755 418 MobiDBLite consensus disorder prediction 1 16 - -
Cme07g01755 418 Coils Coil 28 48 - -
Cme07g01755 418 Pfam Ethylene insensitive 3 29 193 IPR006957 GO:0005634
Cme07g01755 418 Pfam Ethylene insensitive 3 193 240 IPR006957 GO:0005634
Cme07g01755 418 Gene3D - 57 138 IPR023278 GO:0003700|GO:0005634
Cme07g01755 418 Gene3D - 194 249 IPR023278 GO:0003700|GO:0005634
Cme07g01755 418 Gene3D - 146 193 IPR023278 GO:0003700|GO:0005634
Cme07g01755 418 MobiDBLite consensus disorder prediction 358 379 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01755 K14514 EIN3; ethylene-insensitive protein 3 - csv:116406094 751.125
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01109 Cme-Chr3:20497648 Cme07g01755 Cme-Chr7:23062323 1.76E-88 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme02g00432 . 2 624 EIL Transcription Factor Family AT2G27050 58.7 6.1e-192 667.5
Cme03g01109 . 2 506 EIL Transcription Factor Family AT2G27050 62.2 8.6e-170 594.0
Cme02g00518 . 44 292 EIL Transcription Factor Family AT2G27050 68.3 1.4e-95 347.4
Cme02g00518 . 44 578 EIL Transcription Factor Family AT1G73730 54.9 2.5e-147 519.2
Cme02g00432 . 36 334 EIL Transcription Factor Family AT1G73730 61.9 4.6e-104 375.6
Cme03g01109 . 37 334 EIL Transcription Factor Family AT1G73730 61.9 7.8e-104 374.8
Cme02g00432 . 3 624 EIL Transcription Factor Family AT3G20770 61.7 6.5e-208 720.7
Cme03g01109 . 6 504 EIL Transcription Factor Family AT3G20770 63.4 2.6e-172 602.4
Cme02g00518 . 44 292 EIL Transcription Factor Family AT3G20770 69.7 1.5e-98 357.5
Cme02g00518 . 83 288 EIL Transcription Factor Family AT5G65100 58.7 1.6e-69 260.8
Cme07g01755 . 23 323 EIL Transcription Factor Family AT5G10120 50.6 4.0e-77 285.8
Cme02g00518 . 44 290 EIL Transcription Factor Family AT5G10120 54.8 8.7e-72 268.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012054 0 1 0 0 0 1 2 2 1 1 1 1 2 1 1 2 1 0 2 1 1 2 0 0 1 1 1 2 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41686 PF04873 EIN3 3.00E-75 No_clan Cme TF