Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01777 ATGAAAATGATGTTGGTTAGGATGGGAGAACTCTATCTTCCAATTCTAATACTGGCTTGCTTTAATTATCTTGCCCTCTCTGATTTTCAAGGTGATGCACTCTTTGCATTGAAGAATGCATTGAATGCTACAGCAAATCAGCTCACAGATTGGAACCCAAATCAAATCCTTGTCCACAATGGGATTTACTGGAACCTTGTCTCCGCGAATTGGAAGTATAAAATCACTTTCAACTCTGTGAGTAGTGTGTTAGTTATGAAATTCACCAAGCCTAATATGTTACTCTCTAGAAGGATTTTGCAGGGAAATTACATAACTGGGGAGATACCAAAGGATTTTGGAAACCTGACAAATTTGGTTAGTTTGGATTTGGGAAATAACAGCCTAACTGGCCAAATACCATCATCCCTGGGTAATCTTAAGAAACTACAGTTCCTTCTGCTTGATTCGAATGATCTCAGTGGTCCAATTCCGCAGCAGTTATTTCAAGTTCCAAAATTCAACTTTTCCGCAAACAAGTTAAATTGTGGTGGGAAGTCTCTTCATGCCTGTGCTTCAGACAGTACAAACTCAGGTTCTTCAAATAAACCCAAGGTGGGCCTCATAGTTGGCATAATTGCTGGGTTTACTGTTGCTCTTCTTTTGGTTGGAGTATTATTTTTCTTGTCCAAGGGTAGATATAAAAGCTACAAGCGCGAAGTGTTTGTAGACGTTGCAGGTGAAGTTGATCGAAGAATTGCTTTTGGTCAGTTGAAAAGATTTGCCTGGAGGGAACTACAGCTAGCTACAGAAAACTTCAGTGAAAAAAATGTTTTAGGACAAGGAGGCTTTGGAAAGGTGTACAAAGGGGTGCTTGCAGATGGCACCAAAGTTGCGGTGAAACGGTTGACTGATTATGAGAGTCCAGGGGGAGATGCAGCTTTTCAGCGTGAAGTTGAGATGATTAGTGTAGCTGTCCATAGAAATCTGTTGCGTCTCATCGGATTCTGCACAACTCAGACAGAACGCCTATTGGTGTATCCCTTTATGCAGAACTTGAGTGTTGCCTATCGTCTTCGAGAACTAAAGCCCGGAGAAGCTGTTCTAGATTGGCCTACTCGAAAACGGGTGGCATTGGGCACAGCTCGTGGTTTAGAGTATCTTCATGAACATTGCAACCCAAAGATTATTCATCGAGATGTTAAGGCAGCTAATGTATTGCTTGATGAAGATTTTGAAGCAGTTGTTGGCGATTTTGGCTTAGCAAAGTTGGTTGATGTTAGGAAGACTAATGTCACTACTCAAATTCGAGGGACAATGGGTCACATAGCACCGGAGTACTTATCTACTGGAAAGTCATCCGAAAGGACTGATGTTTTTGGTTATGGTATCATGCTTTTAGAACTTGTTACAGGACAACGTGCAATTGACTTCTCACGCTTAGAAGAAGAGGATGACGTTTTACTACTCGACCATGTTAAGAAACTAGAAAGGGAGAAACGACTTGATGCCATTGTCGATCGTAATCTAAATAACTACAACATTCAAGAGGTAGAGATGATGATTCAAGTGGCATTGCTGTGCACACAGCCATGCTCGGATGACCGTCCAGCAATGTCACAAGTCGTTCGGATGCTCGAAGGAGAGGGATTAGCCGAGAGGTGGGAAGAATGGCAGCATTTGGAGGTGACTCGCAGGCAAGAATACGAAAGACTGCAGAGAAGATTTGAATGGGGAGAAGATTCAATACATAGACAGGATGCAATCCAATTATCTGGTGGAAGATGA 1767 42.11 MKMMLVRMGELYLPILILACFNYLALSDFQGDALFALKNALNATANQLTDWNPNQILVHNGIYWNLVSANWKYKITFNSVSSVLVMKFTKPNMLLSRRILQGNYITGEIPKDFGNLTNLVSLDLGNNSLTGQIPSSLGNLKKLQFLLLDSNDLSGPIPQQLFQVPKFNFSANKLNCGGKSLHACASDSTNSGSSNKPKVGLIVGIIAGFTVALLLVGVLFFLSKGRYKSYKREVFVDVAGEVDRRIAFGQLKRFAWRELQLATENFSEKNVLGQGGFGKVYKGVLADGTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTQTERLLVYPFMQNLSVAYRLRELKPGEAVLDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQIRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLDAIVDRNLNNYNIQEVEMMIQVALLCTQPCSDDRPAMSQVVRMLEGEGLAERWEEWQHLEVTRRQEYERLQRRFEWGEDSIHRQDAIQLSGGR 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23303566 23311045 - MELO3C017611.2.1 Cme07g01777 333793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01777 588 Pfam Leucine rich repeat 100 153 IPR001611 GO:0005515
Cme07g01777 588 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 151 588 - -
Cme07g01777 588 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 151 588 - -
Cme07g01777 588 SUPERFAMILY Protein kinase-like (PK-like) 246 540 IPR011009 -
Cme07g01777 588 Gene3D Transferase(Phosphotransferase) domain 1 343 559 - -
Cme07g01777 588 Gene3D Ribonuclease Inhibitor 29 174 IPR032675 -
Cme07g01777 588 Pfam Protein kinase domain 267 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g01777 588 SUPERFAMILY L domain-like 100 166 - -
Cme07g01777 588 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 161 - -
Cme07g01777 588 ProSitePatterns Protein kinases ATP-binding region signature. 272 294 IPR017441 GO:0005524
Cme07g01777 588 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 161 - -
Cme07g01777 588 ProSiteProfiles Protein kinase domain profile. 266 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g01777 588 Gene3D Phosphorylase Kinase; domain 1 235 342 - -
Cme07g01777 588 SMART serkin_6 266 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g01777 588 ProSitePatterns Serine/Threonine protein kinases active-site signature. 389 401 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01777 Cme-Chr7:23303566 Cme11g00012 Cme-Chr11:141851 0 dispersed
Cme07g01776 Cme-Chr7:23290559 Cme07g01777 Cme-Chr7:23303566 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65031 PF00069 Pkinase 2.70E-42 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01777 - - csv:116403405 1018.45