Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01806 ATGTTTCAAGGGTTTGTTTTTGGGATTAATGACGTGTACGGCCACGAATTCTCCGCCGTGTCACTGCCGGAAGTCACGGTCGGTAACTTAACGGAAAAAGTAGACGACACGGCGGTGTTCAGCACCGACGAGTTTCGGATGTACTCTTACAAGATCCAACGGTGCCCAAGAAACCGCAGCCACGATTGGACGGAATGTCCGTATGCACACCGTGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTCAATTACACTGCTGTGGCCTGCCCGGCTTTTCGATCGGGGAGCTGTCCGAAGGGAGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTATTGGCTTCACCCGGCTCGGTACCGGACCCGGGCCTGTAATGCCGGCCGATTTTGTCAAAGGAAAGTTTGTTTTTTTGCTCACTCGCCGGAGGAACTCCGGCCTGAAACCAAACACAAGTTTAATTTGAATGCTCAACGGCAGCGTGTGGCGGTGGCTGCCGTTGAAAGTCCGCCGGAGGAAAAGAATGACGGAATTTTGGAAATCCCCGCGAGGGAGAACGGCGGTGGACGGAAAAATGAACGGAGTTTTGGATTTGATGTGTCGGAATTGGAGTTGCCGCATATTGAATGGATATCGGAATTGTTGAAGTAA 651 52.23 MFQGFVFGINDVYGHEFSAVSLPEVTVGNLTEKVDDTAVFSTDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKHKFNLNAQRQRVAVAAVESPPEEKNDGILEIPARENGGGRKNERSFGFDVSELELPHIEWISELLK 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23508122 23508772 + MELO3C017641.2.1 Cme07g01806 333822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01806 216 SUPERFAMILY CCCH zinc finger 83 114 IPR036855 GO:0046872
Cme07g01806 216 PANTHER UNKEMPT FAMILY MEMBER 34 167 IPR045234 -
Cme07g01806 216 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 54 34 167 - -
Cme07g01806 216 ProSiteProfiles Zinc finger C3H1-type profile. 84 111 IPR000571 GO:0046872
Cme07g01806 216 Gene3D - 79 153 - -
Cme07g01806 216 SMART c3hfinal6 119 142 IPR000571 GO:0046872
Cme07g01806 216 SMART c3hfinal6 84 110 IPR000571 GO:0046872
Cme07g01806 216 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 89 109 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01806 Cme-Chr7:23508122 Cme10g01094 Cme-Chr10:9857173 6.62E-53 dispersed
Cme07g01806 Cme-Chr7:23508122 Cme07g00245 Cme-Chr7:1573011 2.46E-54 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41690 PF00642 zf-CCCH 1.20E-05 CL0537 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01806 - - mcha:111011570 303.138