Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01829 ATGAGTCAGGACAAAAGTAGAGAATTCCTGCATTCTGGAAACGACAAAGACAAATTCAAGGCAACTCTTCTTCAGCAAGTGGACGATCTGCTGAAAAATATTTTTGATCATTTGAGATCTGCCAATGCACTTGTTGATGACTTGGAGTCCACCATACGACCTGTAGAGAAGGAACTGAATGAGCTGCGAGGAAAAATTAAAAACATGGAGCAGGTAGAAGAAATCTCTCAACAAGTTCAACAATTAAAGAAAAAGCTTGCTTGGTCATGGGTATATGATGTAGACAAGCAGCTTCAGGAGCAAAGTGCAAAAATAGGAAAGCTCCAAGATCGCATTCCTATTTGTCGAGCAAAAATTGATCATCAGCTGGGTCTGGCGGAAAAATTAAGGGAACGCTATATTGAGAAAAAAACTCAAATCGCAAGCATGATGGAGAGAACTTCAGAAGTGAGAAGAATGAAGGATGAACTGCAGGAAACTCTTACCTTGGCAACAAGAGAGAAGCTCGGACTTGAAGAGGAGCATGGTCGTAAAATAAACTACATCCAAAAGATGGCAAAGCGTGTTAGGCTGCTTGAGCAACAAGTTCAAGATATTCATGAGCAGCACATAAGAAATACCCAGGCTGAAGAATCTGAAATTGAGGAAAAGTTGAAGGAACTCGAATTGGAGACTGAAGCTGCTAAGTCAACAGTAATGAGAAAGGACTGCATAGTATCTTATTTAATCAACAGGTTGAAAGATGAGGAGAATGCCTTGATGGAAAGTCTGTACAGTGGGAGAAATGAAATAAAAAAGATTGCCGAAGAGATTGCAAGTTACGAGAAAAAAGCCTATGAATTTTCTCACTCAATTCAAGAGCTCAAGCAGCATCAAACCAACAAGGTCACAGCTTTTGGAGGTGACAAAGTCATTCAATTATTACGTGCAATTGAGAGGCACCATCAAAGGTTCAAGAAACCTCCCATTGGTCCAATTGGTTCCCATCTGTCATTATCATATGGATTGGCTTCTTTGATAATCAACGTGTTTCAGATTTGGTGTGCTACCGAGGTTCTTTTGTCTCCGGGAGATTGTTCTTTCCGGTGGCAGCAGCTTAGTACTAATTTGGTCAATGGTGACATGTGGGCTCCTGCTGTTGAAATTGCCATTGGGAGGTTGCTCAATGCTTTCATCGTGACTGATCACCAAGATTCTCTTCTTTTGAGAAGATGTGCAAATGAAGCTAATTATAGGCAACTCCCAATTGTCATCTATGACTTTTCAAGACCAGTGTTAAATATTCCAGCTCACATGCTTCCTCAAACAAAGCATCCTACAACCCTTTCTGTCATTCATTCTGAAAACCATACTGTCGTCAATGTTTTGATAGATAAGGGTGATGCTGAGAGGCAAGTACTTGTTAAAGATTATAATGTGGGTAAATCAGTTGCATTTGACCAACGGATCTCAAATCTCAAGGAGGTCTTTACATTAGATGGATACAAAATGTTTTCACGTGGTTCTGTTCAGACAATTCTTCCTCCAGTTAGAAAACCCAGAAGTGGCAGACTTTGTAGCTCCTTTGACGACCAAATTAAAAGTCTTGAAAAAGATGCATTGAATGTAAAGCAAGAAGCTGAACAATGTAGGAAGAGGAAGAGAGCTTCAGAAGAACAACTCCGGGATCTTGAAGACAACCTAAATAATGCGAAGAGGAGGTGTCGGAGTGCAGAACGGTCTTTAATGTCCAAAAATTTGGAGCTGCAAGATTTACGAAAGTCACAAGTTGCTGAAACTAGTTCAGTACCTTCATCAAATGTGGATGAGCTACACCAAGAAATTTCTAAAATTGAAGAGGAGATACAAGAGAATAAGATGCTTCTCGAAAAGTTTAAAGTTAGGATGAAAGAAGCGGAGGCAAAGGCAAAAGATCTTAAAGTATCATTTGAAAATCTGTGTGAGTCAGCAAAAGGAGAAATTGATGCATTTGAAGAAGCTGAGAGAGATATGTTGGAGCTTGAAAGAAAATTGCATTCTGCAGAAAAGGAGAAGGATCATTATGAAAGTATTATGACTAATAAGGTCCTTTTTGATATTAAAGAGGCAGAGAGACAACATCAGGAGCTTGAGCGTCATCGTAAGGAGAGTTACAATAAGGCTTCAATAATATGTCCTGAGAGTGAAATTGAGGCTTTAGGTGATTGGGATGGGAGCACACCCGAACAACTCAGTGCACAATTAACAAGGCTAAATCAGAGACTTAATAACGAGACCAGAAGATGTTCTGAATCTTTGGAAGACCTGAGGATGATGTATGAGAAAAAGGAGCGCACAATTATAAGAAAACAACTGACTTATAAAAGTTTTAGAGAGAAGTTGGATGCTTGCCAGAAAGCTCTTCAGCTACGGCGGAACAAGTTTGAAAGGAATGCTAGTCTTTTGAAGCGCCAATTGACTTGGCAATTTAATGGCCATTTAAGAAAAAAAGGGATCAGCGGACATATAAAAGTTAATTATGAGGAAAAGACCCTCTCAGTTGAGGTGAAGATGCCCCAGGATGCATCCAGCAGTTCTGTTCGTGATACCCGTGGACTTTCAGGCGGAGAACGATCATTTTCGACTCTATGCTTTGCTTTGGCATTACACGAGATGACAGAAGCCCCATTTCGAGCAATGGATGAGTTTGATGTGTTTATGGATGCAGTAAGTCGGAAAATTAGCTTAGACACTCTTGTGGATTTTGCATTGGCACAAGGCTCCCAATGGATTTTTATCACGCCTCATGACATCGGGATGGTAAAACAAGGAGAAAGAATCAAGAAGCAACAAATGGCAGCTCCTCGATCATGA 2832 40.22 MSQDKSREFLHSGNDKDKFKATLLQQVDDLLKNIFDHLRSANALVDDLESTIRPVEKELNELRGKIKNMEQVEEISQQVQQLKKKLAWSWVYDVDKQLQEQSAKIGKLQDRIPICRAKIDHQLGLAEKLRERYIEKKTQIASMMERTSEVRRMKDELQETLTLATREKLGLEEEHGRKINYIQKMAKRVRLLEQQVQDIHEQHIRNTQAEESEIEEKLKELELETEAAKSTVMRKDCIVSYLINRLKDEENALMESLYSGRNEIKKIAEEIASYEKKAYEFSHSIQELKQHQTNKVTAFGGDKVIQLLRAIERHHQRFKKPPIGPIGSHLSLSYGLASLIINVFQIWCATEVLLSPGDCSFRWQQLSTNLVNGDMWAPAVEIAIGRLLNAFIVTDHQDSLLLRRCANEANYRQLPIVIYDFSRPVLNIPAHMLPQTKHPTTLSVIHSENHTVVNVLIDKGDAERQVLVKDYNVGKSVAFDQRISNLKEVFTLDGYKMFSRGSVQTILPPVRKPRSGRLCSSFDDQIKSLEKDALNVKQEAEQCRKRKRASEEQLRDLEDNLNNAKRRCRSAERSLMSKNLELQDLRKSQVAETSSVPSSNVDELHQEISKIEEEIQENKMLLEKFKVRMKEAEAKAKDLKVSFENLCESAKGEIDAFEEAERDMLELERKLHSAEKEKDHYESIMTNKVLFDIKEAERQHQELERHRKESYNKASIICPESEIEALGDWDGSTPEQLSAQLTRLNQRLNNETRRCSESLEDLRMMYEKKERTIIRKQLTYKSFREKLDACQKALQLRRNKFERNASLLKRQLTWQFNGHLRKKGISGHIKVNYEEKTLSVEVKMPQDASSSSVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALAQGSQWIFITPHDIGMVKQGERIKKQQMAAPRS 943
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23756301 23777000 + MELO3C017663.2.1 Cme07g01829 333845

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01829 943 Coils Coil 741 761 - -
Cme07g01829 943 Gene3D - 519 689 - -
Cme07g01829 943 Coils Coil 154 174 - -
Cme07g01829 943 Coils Coil 182 202 - -
Cme07g01829 943 Coils Coil 693 713 - -
Cme07g01829 943 Coils Coil 126 146 - -
Cme07g01829 943 Coils Coil 45 85 - -
Cme07g01829 943 CDD ABC_SMC6_euk 847 943 - -
Cme07g01829 943 Gene3D - 18 114 - -
Cme07g01829 943 Gene3D - 693 938 IPR027417 -
Cme07g01829 943 Coils Coil 791 811 - -
Cme07g01829 943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 830 932 IPR027417 -
Cme07g01829 943 Coils Coil 526 588 - -
Cme07g01829 943 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 1 335 - -
Cme07g01829 943 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 369 943 - -
Cme07g01829 943 Pfam RecF/RecN/SMC N terminal domain 200 935 IPR003395 -
Cme07g01829 943 Coils Coil 601 684 - -
Cme07g01829 943 Coils Coil 204 231 - -
Cme07g01829 943 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 1 335 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Cme07g01829 943 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 369 943 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01829 K22804 SMC6; structural maintenance of chromosomes protein 6 - csv:101208493 1634.77
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme01g02432 . 4 1044 Structural Maintenance of Chromosomes family AT5G15920 69.1 0.0e+00 1389.0
Cme07g01829 . 1 943 Structural Maintenance of Chromosomes family AT5G07660 57.9 2.6e-286 981.9
Cme07g01829 . 1 943 Structural Maintenance of Chromosomes family AT5G61460 61.0 1.0e-306 1049.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010088 0 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 3 1 1 1 1 1 2 32