Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01839 TTTAATTTATTTTTTATTTTTTTCATTTGCTTTTCTTTCCCCAATCAATCTCTTTCTCTCTTTTCATTTCGTTTTGTTCAAACCCAAAGCTCACAGATCCAAAATCCAAATCCAAATCCTATGTACCAATCAACTTCTTCCTCTTCTTCCTCTCAAAAATCCATGTCCTCCGCCCACGCCGCCGCCTCTGGTGGTGGTCTCACTCGGTACGGTTCCGCCCCTGGATCTTTCCTCACGACAGCAGTCGATTCCGTGATTGGAAGTCGTCAACCGGACTCCGCCGCCACGCTCCGTGGCCCGCCGTCCTTTGGCAACCACTACTTCTCCTCCGCCGATTCCTCCGTCGTGGAATCCTCAAGGAAAGTTGTTCAGTCGTCCTCTACTTCCAACGATCTGAAATCGTCGTCCACCACCGCCTTGAATAGGTCGTACGGATTCAACGATTTGGCGTTGGGGGATTTCTCGACGGGTAGAAACTTCAATAGCAATAGCAATGGTGGTCAATCCTCTTCCTCTTCACCGTTGGTTCGCCAGAGAAGCTCTCCCGCTGGATTTCTCGGCCATCTCTCCGTCGCCGAACCAAACGGTGGGTTTTCATTGACAATGGGGGGAGGTGGAAGTGGAAGTGGAAGTGGAGGAGGAGGAGGAGGAAGACTAAAGAATCAAATGAGTTTCAATGGGCAAGATAATTCACTTTCTCAAATCTCAGAAATTAGTGAAAGTTTCGTAGAGGCAGCCAATTCTTGTAGCAATGGCCTTCAAAGCAACACCAATTCAACACATTCCTTTGCTCCTTCTTCTGCCTTCGCTATGGATTCTTCCTGGGACACTTCTAGTAACTCCATCGTCTTTGCTGCTCCTCATGCTAAAAGATCCAAGCACCACCATTCCGATGCTGACTTCTTCTCCGGCCTCGAGTCGCAATTTAGCTTGCCACAAACAACCCTAGAAATGGCAGCTGTGGAGAGGCTGCTACAAATTCCTGAAGACTCCGTTCCTTGTAAGATTCGAGCTAAGCGTGGCTGTGCTACTCATCCTCGGAGTATCGCCGAACGGGAGAGGAGAACTAGAATCAGTGGAAAATTGAAAAAACTTCAAGAGCTTGTTCCCAACATGGATAAGCAAACAAGTTATTCAGACATGTTGGACTTAGCAGTGCAGCATATCAAAGGTCTTCAAAATCAAATTCAGAAGCTTAACAAAGAAGTTGAGAATTGCACCTGTGGAAGCAAAGAATGCTCATGA 1245 47.07 FNLFFIFFICFSFPNQSLSLFSFRFVQTQSSQIQNPNPNPMYQSTSSSSSSQKSMSSAHAAASGGGLTRYGSAPGSFLTTAVDSVIGSRQPDSAATLRGPPSFGNHYFSSADSSVVESSRKVVQSSSTSNDLKSSSTTALNRSYGFNDLALGDFSTGRNFNSNSNGGQSSSSSPLVRQRSSPAGFLGHLSVAEPNGGFSLTMGGGGSGSGSGGGGGGRLKNQMSFNGQDNSLSQISEISESFVEAANSCSNGLQSNTNSTHSFAPSSAFAMDSSWDTSSNSIVFAAPHAKRSKHHHSDADFFSGLESQFSLPQTTLEMAAVERLLQIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYSDMLDLAVQHIKGLQNQIQKLNKEVENCTCGSKECS 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23863126 23868602 + MELO3C017669.2.1 Cme07g01839 333855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01839 414 MobiDBLite consensus disorder prediction 159 179 - -
Cme07g01839 414 SMART finulus 348 398 IPR011598 GO:0046983
Cme07g01839 414 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 406 IPR036638 GO:0046983
Cme07g01839 414 Gene3D - 343 411 IPR036638 GO:0046983
Cme07g01839 414 Coils Coil 382 409 - -
Cme07g01839 414 Pfam Helix-loop-helix DNA-binding domain 347 393 IPR011598 GO:0046983
Cme07g01839 414 PANTHER TRANSCRIPTION FACTOR BHLH129 66 407 - -
Cme07g01839 414 MobiDBLite consensus disorder prediction 159 180 - -
Cme07g01839 414 MobiDBLite consensus disorder prediction 197 227 - -
Cme07g01839 414 CDD bHLH_AtbHLH_like 347 399 IPR045239 -
Cme07g01839 414 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 66 407 - -
Cme07g01839 414 MobiDBLite consensus disorder prediction 32 55 - -
Cme07g01839 414 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 342 392 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02490 Cme-Chr1:32960896 Cme07g01839 Cme-Chr7:23863126 4.34E-36 dispersed
Cme04g02215 Cme-Chr4:29356506 Cme07g01839 Cme-Chr7:23863126 8.34E-45 dispersed
Cme07g01839 Cme-Chr7:23863126 Cme09g00012 Cme-Chr9:86578 1.55E-32 dispersed
Cme07g01839 Cme-Chr7:23863126 Cme02g00522 Cme-Chr2:5414503 2.27E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41692 PF00010 HLH 1.20E-08 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01839 - - csv:101205392 568.54