Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01854 ATGTATGACAATACTAGAAATTTGTTGGTAGATAAAAATGTTAACTTTGTGGGACTGGGAGGAAAGATTGAAAAGGATGAGGTGAAGGGTTTTATCTTGTTAGGTGGGATGTTGTTTCCAATTGGTGCAATGTGGCTAGGTTGGGTATATAGACAATTTCACAAGTACGAACTTTACCCTCCTAGCTTAGTGTTAAAATTTATGATCTTCTCTACAACATCCATTGCAGCATGGAACATTGCCACATTCATCCTAAAGAGAGAGGTCAATAAGACCGTGCTCAAAATTCCTAAAATAGAGCAGAAGGTTTTGGATGCCACTAGCAATGAGCCTTGGGGTCCTCATGGATCCCTTCTTGCAGATATAGCACAGGCAACTAGAAATTATCATGAATATCAAATGATCATGGGAATACTCTGGAAGCGGATTAACGATACCGGCAAGAATTGGAGGCATGTCTACAAGGGCCTGACTGTTTTGGAGTACTTGGTGGGTCATGGATCAGAGCGTGTCATAGACGACATCAGAGAACATGCATATCAGATATCGACCTTATCTGATTTTCAATACATCGACTCCAATGGGAGGGACCAAGGTAACAATGTTAGAAAGAAATCTCAAAATCTTGTTGCCCTTGTAAATGATAAAGAAAGGATCATCGAGGTCAGACAGAAGGCTGCTGCTAATAGGGACAAGTTTCGCAGTGCATCATCTATGGGCAGTATGTATAGACCAAGTTCAGGAGGATATGATGACCGCTATGAAGGACGATATGGAAGCCGTGATGGAGACAGAAATGTTGATTCTTATGGGAGGGAAAGAGATTATGGTTTTAGAGATGACCGTTCTGGCAGAAATGAGGATTCATATGGTCGTGATTATGAAGAACGCTATAACAGAGATGGTTATAAGGATGATGATTATCGAGGAAGAAGTCGAAACATTGATGACTATCAGTATGGTTCAAGGAGCAGGAGCTCTGACAGAGATGGAGAACGTGCATATGATGATGATGGTCAAGTTTCTTCTCGCAACAATGGTGCCAGACCTGATGAGCCATCTCCGGTTGGAAGGCAGCTTGAACGTAAATTTTCAGAACAGAATATTGCTCCACCAAGTTATGAAGAAGCTGTGAATGAATCTGGAAGTACTGTGCCTAGTCAAAGTGTATCTGTAAACAGAGAAGTAGAAGCTCCAGCAACTACTGCTCCAAGAGCTTTTCCTCCACCCGTGTCCAGTACTCCAAGCCAGCAAACTACTCATGGAACCACTGCATCCCCACATCCCCAGGGACCTGATGGTTCTGATGAATTTGACCCCCGTGGTTCAGTTCCAGTTGCTCCAAATGCCTCAAGCAATTTGGAGACAAATTTATTTGACTCATTGGCCTTGGTGCCTGTTGGGCCAGTAACATCATCTGCAGACTCTGAGTGTCATGTTCAGACAAGCGCTACGGTGGGATCCTTTACTCAAAATCAGACTTTTGAAGATCCATTTGGTGACTCGCCTTTTAAAGCCATTTCTTCCAGTGGTGTCCAAGATCAAACACATTTTCAACGTGGGGAATCATTTTCTGCAGCAACTTACTCCAAACCAGACGTCCCTGTTCAACCTCAACCAAATTTGCACCATCCTCGTGAAGAGACTCTGCAACATCAAAATATTGGTGTACTGGCTGATCTTCTCCCTCCTGAAACTTTACCAGCTGCTGTTTCACAGCCCACATATACAACATCAAACCAACCAGTACAGCCAAATTCTCAAGCTGCATCTGGCTTACCTGCACAGTCAAATCCTAATTTGGGGAATTATCAGCGAGATGGAAATATTGCTGCTGTGAATTTTCAAAATCAAACAGAACCAGGGAGAGAGTTCGGCAATGGTATGTTTGTGGCACCGGGAGGAATACCAGCCCATGTATCATATATGGCTCCCCCAAATGCTGGACCTAATGCACAGCCCAACAATTTTGGAACATCTCATAATGGCTCTGCAGTTCCCGCAAGTTCTCATCACACGCTTCAAACTACAAGACCTCCAGCTCATCTTCCTAGTGGAAACTACTTCAATGCGCCACAGGGTTCAGTAGCTCCAGTAGCTTCTCAAGTATCTTACCAAACCTCAAATTTTCCTGTGGTAAAATCTGAGGTTATGGGTAGTTTTAATTCTCAAGCAGGAAACTATACATCCATGGCTTCTCAGCAAAATCCTCCAGCCGGACCACTTTCAACTGCATCCCAAGCTTCGAAGAATAAGTTTGAGACCAAGTCCACAGTATGGTCTGACACATTAAGCAGAGGGCTTGTCAATTTAAACATATCTGGACCTAAAGCAAACCCAACGGCGGACATTGGTGTTGATTTTGAAGCCCTCAATAGGAAGGAGAAGAGGATGGAGAAGCCTAGTACAGCTCCAGTCGTATCTACCATTAACATGGGTAAAGCTATGGGATCTGGTTCTGGGATAGGCCGAGCCGGTGCTAGTGCGTTAAGGCCACTTCCAAATGCAATGTCAGGATCCGGTTCGGGCATGGGCATGGGCATGGGCATGGGCATGAACCCCAATCCTGGCATGGGGATGGGCATGAGAGGCTATGGAGGTATGAATCAACCCATGGGTGGCATGAGTATGAATATGGGTATGGGGCAACAAGGATTTCAAATGCAGCAACCTCGAGCGAACATGCCCGGTGTATACAACCCAATGATGGGTTCTGGTGGTTATGCCCCTCAGCAGCCACCTTACGGCAGTTACCGATGA 2760 44.78 MYDNTRNLLVDKNVNFVGLGGKIEKDEVKGFILLGGMLFPIGAMWLGWVYRQFHKYELYPPSLVLKFMIFSTTSIAAWNIATFILKREVNKTVLKIPKIEQKVLDATSNEPWGPHGSLLADIAQATRNYHEYQMIMGILWKRINDTGKNWRHVYKGLTVLEYLVGHGSERVIDDIREHAYQISTLSDFQYIDSNGRDQGNNVRKKSQNLVALVNDKERIIEVRQKAAANRDKFRSASSMGSMYRPSSGGYDDRYEGRYGSRDGDRNVDSYGRERDYGFRDDRSGRNEDSYGRDYEERYNRDGYKDDDYRGRSRNIDDYQYGSRSRSSDRDGERAYDDDGQVSSRNNGARPDEPSPVGRQLERKFSEQNIAPPSYEEAVNESGSTVPSQSVSVNREVEAPATTAPRAFPPPVSSTPSQQTTHGTTASPHPQGPDGSDEFDPRGSVPVAPNASSNLETNLFDSLALVPVGPVTSSADSECHVQTSATVGSFTQNQTFEDPFGDSPFKAISSSGVQDQTHFQRGESFSAATYSKPDVPVQPQPNLHHPREETLQHQNIGVLADLLPPETLPAAVSQPTYTTSNQPVQPNSQAASGLPAQSNPNLGNYQRDGNIAAVNFQNQTEPGREFGNGMFVAPGGIPAHVSYMAPPNAGPNAQPNNFGTSHNGSAVPASSHHTLQTTRPPAHLPSGNYFNAPQGSVAPVASQVSYQTSNFPVVKSEVMGSFNSQAGNYTSMASQQNPPAGPLSTASQASKNKFETKSTVWSDTLSRGLVNLNISGPKANPTADIGVDFEALNRKEKRMEKPSTAPVVSTINMGKAMGSGSGIGRAGASALRPLPNAMSGSGSGMGMGMGMGMNPNPGMGMGMRGYGGMNQPMGGMSMNMGMGQQGFQMQQPRANMPGVYNPMMGSGGYAPQQPPYGSYR 919
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24014166 24023152 + MELO3C017683.2.1 Cme07g01854 333870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01854 919 Pfam ENTH domain 98 219 IPR013809 -
Cme07g01854 919 MobiDBLite consensus disorder prediction 648 689 - -
Cme07g01854 919 SMART enth_2 97 223 IPR013809 -
Cme07g01854 919 SUPERFAMILY ENTH/VHS domain 96 235 IPR008942 -
Cme07g01854 919 Gene3D - 96 236 IPR008942 -
Cme07g01854 919 PANTHER EPSIN/ENT-RELATED 85 900 - -
Cme07g01854 919 MobiDBLite consensus disorder prediction 412 430 - -
Cme07g01854 919 MobiDBLite consensus disorder prediction 642 689 - -
Cme07g01854 919 ProSiteProfiles ENTH domain profile. 91 223 IPR013809 -
Cme07g01854 919 MobiDBLite consensus disorder prediction 250 339 - -
Cme07g01854 919 MobiDBLite consensus disorder prediction 230 452 - -
Cme07g01854 919 MobiDBLite consensus disorder prediction 570 606 - -
Cme07g01854 919 MobiDBLite consensus disorder prediction 728 750 - -
Cme07g01854 919 MobiDBLite consensus disorder prediction 372 396 - -
Cme07g01854 919 CDD ENTH 99 215 - -
Cme07g01854 919 PANTHER CLATHRIN INTERACTOR EPSIN 2-RELATED 85 900 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01854 K12471 EPN; epsin - csv:101208671 1409.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00833 Cme-Chr3:15547478 Cme07g01854 Cme-Chr7:24014166 2.31E-96 dispersed
Cme03g02137 Cme-Chr3:28574636 Cme07g01854 Cme-Chr7:24014166 2.46E-14 dispersed
Cme07g01854 Cme-Chr7:24014166 Cme12g00196 Cme-Chr12:2005797 9.52E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1118 . . . . . . . . . . . Cma14g01498 . Car14g01330 . . Cpe03g01258 Bhi01g02630 . . . Hepe05g1275 . . . . . . . . . . . . . . . . Cme07g01854 . . . . . . . . . . Cmo14g01533 . . . . . . . . . . . . . Cla07g01582 Cam07g1679 Cec07g1774 Cco07g1737 Clacu07g1663 Cmu07g1629 Cre07g2003 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003028 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 2 2 1 1 12 1 2 53