Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01866 ATGGACGGTCGAGATCATCGTGGTTTTGGTTTAGTGGCGCATGCCCCTCCTCCTGGTTACTTCGTTCGTTTGAAGAATACAGGTTCTAAAGACGATCTATATCTAAGTAAAAGGGATAGAATGCGCAGGTGGCTTTGTTGTACTTGTCAAGTTGAAGAGGCCTACCCATCAGCGGAAAGTGAGCACCTGAAAAGCCCACGAAGTTATGGAGATGGATATATGCAAAGTTGTCTCTCCTCTGTATGTATGTTAGATGAAAATGGTGGAAGGAGGATAATTGAAGGGATCCAAGAAGGAAGTTTGGTGTTCATCATTGCGATGGCAACTAGTTACTGCACATTTTACCTTCTCAGAGAAATTAGAGAAGGAATTTATGGTTCTGGCAATAGAAGTCTTGGGGAAGGGTTGGTTAGATGCAGTGGGATTGATGCTGTAGGCAGTGGTGCCCACCGCCCAAGTTTGGTGAAAGCAACAGTAGAAGGTCACGTTCAAAGGAAAGAGGCAGCTCCTGTCAAACCTGAAGCACCAAAAACTCCACCTCCCATAGAAGTGCCAGCATTGTCTCTGGAAGAATTGAAAGAAAAGACTGACAACTTTGGGTCTAAGGCACTGATTGGTGAAGGGTCTTATGGTCGAGTTTATTATGCTAGTTTAAATGATGGGAAAGCTGTGGCTGTGAAGAAGCTGGATGTTTCTTCTGAGCCCGACTCCAGTGTTGACTTTTTGACTCAGGTTTCTACTGTCTCAAGGTTGAAACATGAAAATTTTGTTGAGTTGCATGGATACTGTGTTGAAGGAAATCTCCGTTTTCATGTCCAGTTAGTTTCTCATGAATTGTGGCTCTACACAGGTAGAAAGGGAGTGCAAGGCGCACAGCCTGGTCCTGTTCTCGATTGGATGCAGAGAGTGAGAATTGCTGTTGATGCCGCTCGAGGATTGGAATACTTGCATGAGAAGGTTCAGCCTTCTATCATACATAGAGATGTTAGATCCAGCAATGTGCTTCTCTTCGAAGATTTCAAAGCAAAGATTGCAGACTTTAACCTTTCAAACCAGGCTCCTGACATGGCTGCTCGGCTTCACTCTACTCGTGTTTTAGGAACTTTTGGCTATCATGCTCCAGAGTATGCAATGACGGGACAATTGACACAGAAGAGTGATGTCTATAGCTTTGGAGTTGTTCTACTTGAGCTTTTGACTGGGAGGAAGCCCGTTGATCATACCATGCCTCGTGGTCAGCAGAGTCTTGTTACTTGGGCTACCCCAAGACTAAGTGAAGACAAAGTTAAACAATGTGTTGATCCAAGGCTGAAGGGTGAATATCCCCCCAAAGGAGTTGCCAAGCTGGCCGCTGTGGCAGCTCTGTGTGTGCAGTACGAAGCCGAGTTCAGGCCAAACATGAGCATCGTCGTCAAGGCTCTCCAGCCGCTTCTAAAGCCACCTGCCCCTGCTCCGGTTGTGGAACCTTGA 1470 46.05 MDGRDHRGFGLVAHAPPPGYFVRLKNTGSKDDLYLSKRDRMRRWLCCTCQVEEAYPSAESEHLKSPRSYGDGYMQSCLSSVCMLDENGGRRIIEGIQEGSLVFIIAMATSYCTFYLLREIREGIYGSGNRSLGEGLVRCSGIDAVGSGAHRPSLVKATVEGHVQRKEAAPVKPEAPKTPPPIEVPALSLEELKEKTDNFGSKALIGEGSYGRVYYASLNDGKAVAVKKLDVSSEPDSSVDFLTQVSTVSRLKHENFVELHGYCVEGNLRFHVQLVSHELWLYTGRKGVQGAQPGPVLDWMQRVRIAVDAARGLEYLHEKVQPSIIHRDVRSSNVLLFEDFKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPRLKGEYPPKGVAKLAAVAALCVQYEAEFRPNMSIVVKALQPLLKPPAPAPVVEP 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24085083 24090649 - MELO3C017693.2.1 Cme07g01866 333882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01866 489 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 156 484 - -
Cme07g01866 489 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 26 73 - -
Cme07g01866 489 Pfam Protein tyrosine and serine/threonine kinase 204 474 IPR001245 GO:0004672|GO:0006468
Cme07g01866 489 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 3 156 484 - -
Cme07g01866 489 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 3 26 73 - -
Cme07g01866 489 SUPERFAMILY Protein kinase-like (PK-like) 177 474 IPR011009 -
Cme07g01866 489 ProSiteProfiles Protein kinase domain profile. 199 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g01866 489 SMART tyrkin_6 199 474 IPR020635 GO:0004713|GO:0006468
Cme07g01866 489 Gene3D Transferase(Phosphotransferase) domain 1 281 481 - -
Cme07g01866 489 ProSitePatterns Tyrosine protein kinases specific active-site signature. 324 336 IPR008266 GO:0004672|GO:0006468
Cme07g01866 489 ProSitePatterns Protein kinases ATP-binding region signature. 205 228 IPR017441 GO:0005524
Cme07g01866 489 Gene3D Phosphorylase Kinase; domain 1 174 273 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00687 Cme-Chr3:11890055 Cme07g01866 Cme-Chr7:24085083 2.75E-09 dispersed
Cme04g01570 Cme-Chr4:23034458 Cme07g01866 Cme-Chr7:24085083 3.31E-152 dispersed
Cme04g02259 Cme-Chr4:29642583 Cme07g01866 Cme-Chr7:24085083 1.06E-142 dispersed
Cme07g01866 Cme-Chr7:24085083 Cme07g02090 Cme-Chr7:25650633 5.76E-86 dispersed
Cme07g01866 Cme-Chr7:24085083 Cme01g02407 Cme-Chr1:32378686 1.02E-161 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65034 PF07714 PK_Tyr_Ser-Thr 6.90E-40 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01866 K13436 - csv:101215403 546.969