Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01878 ATGTCTTTCCTCTGTTTCTTCGCTCTTTCCCTTTTGGGATCCATGTCCATTCTTCTTCAAAATGCCATTGCCTTCAATGAACTTTCTCCTCAACTCAACGACGATATCCTCGGCTTAATCGTTTTCAAATCCGACCTTCATGACCCTTCTTCCGCTCTTTCCTCCTGGAGTGAGGACGACGATTCCCCTTGTTCTTGGAAGTTCATTAAATGTAACCCCATTAATGGCAGAGTTTCTGAGGTTTCCATTGATGGGTTGGGATTATCTGGGAGAATCGGAAGAGGGCTTGAGAAATTACAACATCTTAAGGTATTGTCTCTCTCTGGTAATAATTTCACTGGGAATCTTAATCCTCAGCTTGCTCTTCCTCCTAGTCTCGACAGGGTTAATTTCAGCCGCAATAGTTTATCTGGCCGGATTCCTGTTTCTCTTATCTCTATGTCTTCCGTTAGATTTCTTGATTTTTCTGATAATCTCTTATCTGGGCCACTCCCTGATGAAATGTTTGTTAATTGTTCTTCTCTTCATTATCTTTCTCTTGCCTCTAATATGTTTCAAGGCCCTGTTCCCAACACATTGCCGACAAGTTGTTTGTATTTAAACACTCTCAATCTTTCAACCAATCAATTCTCTGGTAGCGTGAATTTTGCTCCTGGGATTTGGTCTTTAACAAGGCTGAGGACACTAGATCTTTCAAACAATGATTTCTCTGGAGTTTTACCACAAGGGATTTCAGCCATTCATAATCTAAAAGAGCTCAAGTTGCAGAACAACCAATTCTCAGGGCCATTACCTTCAGACTTGGGATTATGCCTCCACTTAGCTAAATTGGACGTCAGTGGAAACCGTCTCACCGGGCCGCTACCGAACTCAATGAGGCTCTTAACCTCCTTAACCTTCTTCAACATAGGATTCAACAGTTTTTCAGATGAGCTCCCACAGTGGATTGGGAACATGACAAGGTTAGAATACATGGATTTCTCAAGCAATGGCTTCACTGGTAGTCTTCCCTTAACAATGGGGGTATTAAGATCGGTGAAATACATGAGTTTTTCAAACAATAAGCTGACTGGGAACATCCCAGAGACATTGATGGAATGTTCTGAGCTATCTGTGATCAAGCTTGAAGGAAACAGATTCAATGGAAGGGTGCCAGAAGGGTTGTTTGAACTGGGGTTAGAGGAGATGGATTTGTCTAAGAATGAGCTGATAGGTTCAATTCCAGTGGGATCAAGTAAGCTATATGAGAAGCTGACAAGAATGGACTTGTCAAGTAACAGATTAGAAGGGAACTTTCCAGCAGAAATGGGGTTGTATAGAAATTTGAGGTACTTGAATCTGTCATGGAATGAGTTTAAGGCAAAGATTCCACCAGAAATGGGGTTGTTTGAGAACCTGAATGTGTTAGATATCAGAAGCAGTGATTTGTATGGTTCAATTCCTGGAGAATTGTGTGATTCTGGAAGTTTGAAGATTCTTCAACTTGATGGAAACTCTTTGGTTGGTCCAATTCCTGATGAGATTGGGAATTGTCTCTCACTTTACTTGCTGAGTTTATCCCACAACAATCTAAGTGGAGAAATTCCAAAGTCAATCTCCAAACTAAGCAAGTTAGAGATTCTAAGACTTGAATCAAATGAACTAAGTGGAGAAATACCTCAAGAGCTTGGAATTCTTCAAAACCTACTGGCTGTTAATATTTCATACAATATGTTAACAGGCAGGCTTCCTGTTGGTGGCATTTTTCCAAGCTTAGATCAAAGTGCTTTGCAAGGAAACTTAGGCCTTTGCTCCCCTTTACTTAAAGGACCTTGCAAAATGAATGTCCCTAAGCCTCTTGTTCTTGATCCCAATGCCTATCCCAATCAAATGGGTGGCCAAAGCAGCAGAAACAGCCCTTCACGATTCTCTAATCCTTCCCCACATCATGTTTTCTTCAGTGTCTCTGCCATTGTTGCCATCTCTGCTGCCACTTTGATTGCCCTTGGGGTGCTTGTAATCACCTTGCTCAATGTCTCTGCTCGGAGGAGATCGCTTACGTTTGTTGACAATGCGTTGGAAAGCTGTTCAAGCTCTTCGAAATCAGGGACCGTCACTGCTGGTAAGCTTATTTTGTTTGATTCAAACTCAAGGGCATCGTCGAATTGGGTTAGTAACCATGAAGCCTTGCTGAATAAGGCATCTGAGATTGGTGGTGGAGTTTTCGGAACGGTTTATAAGGTTTCATTGGGAGATGGAGGAGATGTAGCTATGAAGAAGCTTGTGAAATCAGACATTATTCAAAATCCGGAAGATTTCGACCGGGAAATCCGAATTTTAGGGAAGGTTAAACACCCTAATTTGATCAGCTTAAAGGGTTATTATTGGACTGTTCAAACTCAGCTATTGGTAATGGAGTATGCTAACAATGGAAGTCTTCAAACTCAACTCCATGGAAGGCTTCCTTCAGCTCCACCATTGTCTTGGGATAACAGATTCAAGATTGTGCTTGGGACAGCCAAAGGACTAGCACATTTACACCACTCATTCCGCCCGCCAATCGTTCACTACAATCTAAAGCCAACCAACATCCTCCTAGACGAAAACTTCAACCCAAAGATCTCCGATTACGGGCTCGCAAGACTCCTAACAAAGCTTGACAAGCACGTCGTGAACAACAGATTCCAAAGTGCATTGGGGTACGTCGCACCAGAACTAGCATGCCAGAGCATAAGGGTGAATGAGAAATGCGACGTACACGGTTTCGGGGTGATGATTCTAGAGATCGTGACGGGACGAAGGCCAGTGGAGTATGGAGAAGACAATGTGGTTATATTGACAGACCATGTGAGGTATTTGCTTGAGAGAGGGAATGTGTTGGATTGTGTTGATCCAAGTATGACTCAATATTCAGAAGATGAAGTTGTGCCTATCCTCAAATTGGCTTTGGTTTGCACTTCTCAAATCCCTTCAAGTAGGCCTTCCATGGCTGAAGTTGTGCAGATTCTTCAAGTTATCAAGGCTCCACTTCCTCAAAGAATACAAGGATTTTGA 3033 42.4 MSFLCFFALSLLGSMSILLQNAIAFNELSPQLNDDILGLIVFKSDLHDPSSALSSWSEDDDSPCSWKFIKCNPINGRVSEVSIDGLGLSGRIGRGLEKLQHLKVLSLSGNNFTGNLNPQLALPPSLDRVNFSRNSLSGRIPVSLISMSSVRFLDFSDNLLSGPLPDEMFVNCSSLHYLSLASNMFQGPVPNTLPTSCLYLNTLNLSTNQFSGSVNFAPGIWSLTRLRTLDLSNNDFSGVLPQGISAIHNLKELKLQNNQFSGPLPSDLGLCLHLAKLDVSGNRLTGPLPNSMRLLTSLTFFNIGFNSFSDELPQWIGNMTRLEYMDFSSNGFTGSLPLTMGVLRSVKYMSFSNNKLTGNIPETLMECSELSVIKLEGNRFNGRVPEGLFELGLEEMDLSKNELIGSIPVGSSKLYEKLTRMDLSSNRLEGNFPAEMGLYRNLRYLNLSWNEFKAKIPPEMGLFENLNVLDIRSSDLYGSIPGELCDSGSLKILQLDGNSLVGPIPDEIGNCLSLYLLSLSHNNLSGEIPKSISKLSKLEILRLESNELSGEIPQELGILQNLLAVNISYNMLTGRLPVGGIFPSLDQSALQGNLGLCSPLLKGPCKMNVPKPLVLDPNAYPNQMGGQSSRNSPSRFSNPSPHHVFFSVSAIVAISAATLIALGVLVITLLNVSARRRSLTFVDNALESCSSSSKSGTVTAGKLILFDSNSRASSNWVSNHEALLNKASEIGGGVFGTVYKVSLGDGGDVAMKKLVKSDIIQNPEDFDREIRILGKVKHPNLISLKGYYWTVQTQLLVMEYANNGSLQTQLHGRLPSAPPLSWDNRFKIVLGTAKGLAHLHHSFRPPIVHYNLKPTNILLDENFNPKISDYGLARLLTKLDKHVVNNRFQSALGYVAPELACQSIRVNEKCDVHGFGVMILEIVTGRRPVEYGEDNVVILTDHVRYLLERGNVLDCVDPSMTQYSEDEVVPILKLALVCTSQIPSSRPSMAEVVQILQVIKAPLPQRIQGF 1010
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24153193 24157726 + MELO3C017706.2.1 Cme07g01878 333894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01878 1010 Gene3D Ribonuclease Inhibitor 33 197 IPR032675 -
Cme07g01878 1010 Pfam Leucine rich repeat 393 451 IPR001611 GO:0005515
Cme07g01878 1010 SUPERFAMILY Protein kinase-like (PK-like) 727 1000 IPR011009 -
Cme07g01878 1010 SMART LRR_typ_2 295 319 IPR003591 -
Cme07g01878 1010 SMART LRR_typ_2 147 171 IPR003591 -
Cme07g01878 1010 SMART LRR_typ_2 247 271 IPR003591 -
Cme07g01878 1010 SMART LRR_typ_2 535 559 IPR003591 -
Cme07g01878 1010 SMART LRR_typ_2 223 246 IPR003591 -
Cme07g01878 1010 SMART LRR_typ_2 99 129 IPR003591 -
Cme07g01878 1010 SMART LRR_typ_2 439 463 IPR003591 -
Cme07g01878 1010 ProSiteProfiles Protein kinase domain profile. 724 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g01878 1010 Pfam Leucine Rich Repeat 225 244 IPR001611 GO:0005515
Cme07g01878 1010 Gene3D Ribonuclease Inhibitor 272 341 IPR032675 -
Cme07g01878 1010 Gene3D Ribonuclease Inhibitor 198 271 IPR032675 -
Cme07g01878 1010 Gene3D Ribonuclease Inhibitor 342 608 IPR032675 -
Cme07g01878 1010 PANTHER BNAA09G02190D PROTEIN 11 1008 - -
Cme07g01878 1010 SUPERFAMILY L domain-like 49 385 - -
Cme07g01878 1010 Pfam Leucine Rich repeat 99 114 IPR001611 GO:0005515
Cme07g01878 1010 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 11 1008 - -
Cme07g01878 1010 Pfam Protein kinase domain 726 994 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g01878 1010 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Cme07g01878 1010 SUPERFAMILY L domain-like 312 587 - -
Cme07g01878 1010 ProSitePatterns Protein kinases ATP-binding region signature. 730 752 IPR017441 GO:0005524
Cme07g01878 1010 Gene3D Transferase(Phosphotransferase) domain 1 802 1006 - -
Cme07g01878 1010 Gene3D Phosphorylase Kinase; domain 1 730 801 - -
Cme07g01878 1010 CDD STKc_IRAK 730 997 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02647 Cme-Chr6:33635002 Cme07g01878 Cme-Chr7:24153193 2.18E-157 dispersed
Cme07g01878 Cme-Chr7:24153193 Cme10g01254 Cme-Chr10:13287124 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65035 PF00069 Pkinase 2.40E-42 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01878 - - csv:101217545 1883.23