Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01886 ATGTGTTTGTTGGTGTCAGGTTTAGGTTCAATGTCTCCTCTTGCTGTTTCTTATGGGGAGAAAGGGCCTGTCTTTTGTGGTTTAAAGTCAGATGGGTCTCATCTTGTGAGCTGTTTTGGTTCAAATTCAGCCATAACTTATGGAACCCCTTCTCATTTCCCATTCATTGGTCTCACTGCTGGTGATGGGTTTGTTTGTGGGCTTCTTTTGGATTCCAACCAACCTTATTGTTGGGGAAGCAGTGGCTATGTTCAAATGGGTGTTCCTCAGCCCATGATCAAAGGAGCTCAATACCTGGAAATTAGTGCTGGTGATTATCATCTGTGTGGACTTCGAACGCCTCTCACTGGACGGCATAGGAATATGTCGTTTGTCGATTGTTGGGGTTACAACATGACCAGAACCTTTGCTTTTGATGGTCCTATTGAATCGATCTCAGCGGGGTCTGAGTTCAACTGTGGGCTGTTTTCTCTTAATAGAACTGTTTTCTGTTGGGGTGATGAGACGAGCAGCCGTGTAATCAGTTTGATACCTAAAGATATGAGGTTTCAAAAGATAGCGTCTGGTGGATATCATGTTTGTGGAATTTTAGAGGGTGTAAATTCAAGAGCGTTTTGTTGGGGAAGGAGCTTAGACATTGAAGAAGAGATCTCAGTTGCATATTCAGGTGAAGGAAATGTTGAATTGGTTCCAGTTGATCCATTAGACTCTGTTGTTGGGGGAAAATTCCATGCTTGTGGAATAAAGAGGTCAGACCGTGGTGTGATTTGTTGGGGTTTTACGGTGAAACCGAGTACTCCACCACCAGATGGGATTAAAGTTTACAACATTGCGGCTGGAGATTACTTCACCTGTGGAATTCTAGCTGAAAAATCTCTCTTGCCTGTTTGCTGGGGTCTTGGATATCCTACTTCTCTGCCTTTAGCTGTCTCACCTGGAATCTGTAAAGCAACTCCTTGTCCTCCTGGTTTCTACGAAATTAGCCCAGACAAAGCTCGGTGTAAGTCGCCGAATTTTCATGTGTGTATGCCCTGCAGTACTGCTTGCCCTCCTGATATGTACCTAAAAGTTGAGTGCTCCTTAAAATCTGATAGGCAGTGTGAATATAATTGTTCAACTTGCTTTTCAAGTGAATGCCTCTCAAACTGCTCATCCATGCTTTCAAATGGTATGATGGGGAAGAAAAATGGGAAGTACTGGCCTGTGCAGCAGCTTCCAGTTCTTGTAGCTGAGATTGCTTTTGCTGTGTTTTTGGTAGCTATCGTGTCTTTGACTGCAATCTTATACGTTCGATACAAGTTACGGAATTGCCATTGCTCAGGAAAGGAGTTGAAGTCTAAGAAAAACAAAGGGGCTGCCTCTTCCTTCCAGAGGGAAAGCTATAAAATACGTCCTGACTTGGATGAGCTGAAAATAAGGAGGGCTCAGATGTTCACCTACGAAGAACTTGAGAGAGCGACATGTGGGTTTAAGGAAGAGTCTATTGTGGGAAAGGGAAGTTTCTCTTGTGTTTTTCGAGGGGTTTTAAAGGACGGGACAGTTGTAGCAGTAAAACGAGCTATAATGTCTCCCAACGTGCAGAAGAATTCAAAGGAGTTCCACACTGAACTTGACTTACTATCAAGATTAAACCATGCCCATTTGCTTAATCTCCTTGGTTATTGTGAAGAAGGTGGAGAGAGGCTTCTTGTTTATGAGTTTATGGCTCATGGTTCCTTACATCAGCACCTCCATGGCAAGAACACAGCCTTAAAAGAACAATTGGATTGGATAAGAAGGGTCACAATTGCAGTCCAAGCAGCCAGGGGAATTGAATACTTGCATGGCTATGCTTGTCCTCCAGTCATTCATCGAGATATTAAGTCGTCAAACATTCTCATCGACGAAGAGCATAATGCTCGAGTTGCTGATTTTGGCTTGTCGTTGTTGGGACCGACTGATAGTAGCTCTCCATTAGCTGAGCTACCAGCGGGGACTCTTGGCTATCTTGATCCTGAATACTATAGACTTCATTACCTTACCACTAAGTCCGATGTGTATAGCTTTGGTGTTTTACTGCTAGAAATTCTCAGCGGTAGAAAAGCCATTGATATGCAATATGAAGAAGGGAACATAGTTGAATGGGCAGTGCCTTTGATAAGATCTGGAGATATCTCTGCAATTTTAGATCCGATATTAAAACCGCCTTCCGATACAGAGGCCTTGAAGAGGATTGCAAATGTAGCCTGTAAATGTGTGAGAATGAGAGCGAAGGAGAGGCCATCAATGGACAAAGTGACAACTGCTTTGGAGCGTGCTCTTGCCCAATTAATGGGAAGCCCGTGTAACGAACAACCGATCTTACCAACCGAGGTGGTTTTGGGAAGCAGCAGACTACACAAAAAGTCTTCTCAAAGATCATCAAACCGTTCAGCCTCTGAAACAGATATAGCAGAAGCTGAAGATCAAAGGTTTGAGTTCAGAGCTCCATCGTGGATTACATTCCCAAGTGTGACATCGTCCCAGAGGAGGAAATCCTCGGTGTCAGAAGCAGATGTTGATGGAAAGAATTTGGAAGGAAGAAATGTAGGGAATTGTGGAGGTGTTGGGGATGGATTGAAGAGTTTAGAGGAAGAGATTGGACCTGCTTCCCCTCAAGAAAAGTTGTTCTTGGAGCACAATTTTTAA 2667 43.61 MCLLVSGLGSMSPLAVSYGEKGPVFCGLKSDGSHLVSCFGSNSAITYGTPSHFPFIGLTAGDGFVCGLLLDSNQPYCWGSSGYVQMGVPQPMIKGAQYLEISAGDYHLCGLRTPLTGRHRNMSFVDCWGYNMTRTFAFDGPIESISAGSEFNCGLFSLNRTVFCWGDETSSRVISLIPKDMRFQKIASGGYHVCGILEGVNSRAFCWGRSLDIEEEISVAYSGEGNVELVPVDPLDSVVGGKFHACGIKRSDRGVICWGFTVKPSTPPPDGIKVYNIAAGDYFTCGILAEKSLLPVCWGLGYPTSLPLAVSPGICKATPCPPGFYEISPDKARCKSPNFHVCMPCSTACPPDMYLKVECSLKSDRQCEYNCSTCFSSECLSNCSSMLSNGMMGKKNGKYWPVQQLPVLVAEIAFAVFLVAIVSLTAILYVRYKLRNCHCSGKELKSKKNKGAASSFQRESYKIRPDLDELKIRRAQMFTYEELERATCGFKEESIVGKGSFSCVFRGVLKDGTVVAVKRAIMSPNVQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEFMAHGSLHQHLHGKNTALKEQLDWIRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPTDSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEEGNIVEWAVPLIRSGDISAILDPILKPPSDTEALKRIANVACKCVRMRAKERPSMDKVTTALERALAQLMGSPCNEQPILPTEVVLGSSRLHKKSSQRSSNRSASETDIAEAEDQRFEFRAPSWITFPSVTSSQRRKSSVSEADVDGKNLEGRNVGNCGGVGDGLKSLEEEIGPASPQEKLFLEHNF 888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24204675 24207619 + MELO3C017714.2.1 Cme07g01886 333902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01886 888 CDD STKc_IRAK 496 765 - -
Cme07g01886 888 Gene3D Transferase(Phosphotransferase) domain 1 568 775 - -
Cme07g01886 888 Pfam Protein kinase domain 490 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g01886 888 MobiDBLite consensus disorder prediction 791 807 - -
Cme07g01886 888 Gene3D Phosphorylase Kinase; domain 1 462 567 - -
Cme07g01886 888 ProSitePatterns Serine/Threonine protein kinases active-site signature. 615 627 IPR008271 GO:0004672|GO:0006468
Cme07g01886 888 ProSiteProfiles Protein kinase domain profile. 490 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g01886 888 SUPERFAMILY RCC1/BLIP-II 10 260 IPR009091 -
Cme07g01886 888 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 319 367 IPR001368 GO:0005515
Cme07g01886 888 SUPERFAMILY Protein kinase-like (PK-like) 472 763 IPR011009 -
Cme07g01886 888 Gene3D - 15 167 IPR009091 -
Cme07g01886 888 PANTHER RECEPTOR-LIKE KINASE 5 888 - -
Cme07g01886 888 MobiDBLite consensus disorder prediction 831 863 - -
Cme07g01886 888 ProSitePatterns Protein kinases ATP-binding region signature. 496 518 IPR017441 GO:0005524
Cme07g01886 888 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 5 888 - -
Cme07g01886 888 MobiDBLite consensus disorder prediction 791 811 - -
Cme07g01886 888 Gene3D - 179 321 IPR009091 -
Cme07g01886 888 SMART serkin_6 490 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01614 Cme-Chr4:23352235 Cme07g01886 Cme-Chr7:24204675 3.91E-70 dispersed
Cme07g01886 Cme-Chr7:24204675 Cme08g02316 Cme-Chr8:30118724 1.11E-118 dispersed
Cme10g00700 Cme-Chr10:4401121 Cme07g01886 Cme-Chr7:24204675 1.51E-51 dispersed
Cme12g00076 Cme-Chr12:764008 Cme07g01886 Cme-Chr7:24204675 1.82E-87 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65036 PF00069 Pkinase 5.80E-44 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01886 - - csv:101210393 1787.31