Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01894 ATGTTTTTTGCTTGTCCTATTCGAATACCGGCGCTTTCAATCACATTTGCTCGAAGAATTACATGCAGCGCCATGTCGAAAGGAAGTTCGTCCTCCTTGCCAACAAGTTCGAACGAAGTCCCTCCTAACCCGGGAATTTCGAGTGTTAAGTCCTCCAATGGCGTTTCTGAGCCTGAAACTCGGGTATTTGTGAGGAGAAGAGTGAAAAAGATTGCAGAAAGTCAAGATAGTGGGTTTGAAGTTGAACCTAAAATCGACACTAAACGCTCCTGTCCTCCTAATATTGAAGATTTTGCATTCAAAAGAACAAAGGATTCCCCTGGATCAAGGGAGTCAAAGCCTCCTCCAGATCTTCTTCTCAACGGAATTGAAGGTTCTACTCCAACTACACATAAAGGCAATGCAGGACGAGGTAAACCACCTGAGAATTGGGAAAAAGTTCTTAAAGGAATTCGGGAAATGAGGTCCTCTGAAGAAGCTCCAGTAGATACCATGGGATGTGGACGAGCTGGTAGTACTCTTCCTCCCAAGGAAAGAAGATTCGCTGTCTTGGCATCTTCTCTTCTCTCAAGCCAAACCAAAGACCACGTGACTCATGGCAAGAGTGCAGGAGCAGCATTGCGTCTCCAAGAAAGTGGTCTTCTTACTGCTGAAGCCATGGACAAAGCTGATGAAGAAACCATTAAAAGTTTGATTTACCCGGTTGGATTTTATTCCACAAAGGCTAAGAATTTGAAGAAGATTGCAAAAATATGTCTTATGAAGTATGGTGGGGACATACCTAGATCATTGGAGGAGCTACTTCTGCTACCTGGGATAGGCCCTAAGATTGCACATTTGATCATGATTATGGCTTGGAACGATGTTCAGGGGATATGTGTAGACACTCATGTGCATCGCATTTGCAATCGGCTTGGGTGGGTGTCTGGGAAAGGCTCAAAACAGAAAACATCAACTCCTGAAGAAACTCGAGTAGGATTAGAACTGTGGCTGCCAAAAGAAGAATGGGTTCCAATTAATCCTCTTCTGGTTGGATTTGGACAGACTATTTGCACTCCCCTTAGACCCAAATGTGGAAATTGCAGTGTTAGTGACCTATGCCCATCTGCATTCAAGGAGTCTTCAAGCCCATCTCCCAAGTTAAAGGGTTCAAGTTCTACCAAAAAGTTGTGA 1173 44.08 MFFACPIRIPALSITFARRITCSAMSKGSSSSLPTSSNEVPPNPGISSVKSSNGVSEPETRVFVRRRVKKIAESQDSGFEVEPKIDTKRSCPPNIEDFAFKRTKDSPGSRESKPPPDLLLNGIEGSTPTTHKGNAGRGKPPENWEKVLKGIREMRSSEEAPVDTMGCGRAGSTLPPKERRFAVLASSLLSSQTKDHVTHGKSAGAALRLQESGLLTAEAMDKADEETIKSLIYPVGFYSTKAKNLKKIAKICLMKYGGDIPRSLEELLLLPGIGPKIAHLIMIMAWNDVQGICVDTHVHRICNRLGWVSGKGSKQKTSTPEETRVGLELWLPKEEWVPINPLLVGFGQTICTPLRPKCGNCSVSDLCPSAFKESSSPSPKLKGSSSTKKL 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24235871 24241642 - MELO3C017721.2.1 Cme07g01894 333910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01894 390 MobiDBLite consensus disorder prediction 74 143 - -
Cme07g01894 390 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 70 390 - -
Cme07g01894 390 MobiDBLite consensus disorder prediction 26 58 - -
Cme07g01894 390 Pfam Helix-hairpin-helix motif 255 282 IPR000445 GO:0003677
Cme07g01894 390 MobiDBLite consensus disorder prediction 74 91 - -
Cme07g01894 390 SUPERFAMILY DNA-glycosylase 152 379 IPR011257 GO:0003824|GO:0006281
Cme07g01894 390 MobiDBLite consensus disorder prediction 369 390 - -
Cme07g01894 390 CDD ENDO3c 181 347 IPR003265 GO:0006284
Cme07g01894 390 ProSitePatterns Endonuclease III family signature. 258 287 IPR004036 -
Cme07g01894 390 SMART ccc3 350 370 IPR003651 GO:0051539
Cme07g01894 390 Gene3D - 284 373 IPR023170 -
Cme07g01894 390 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 351 367 IPR004035 -
Cme07g01894 390 Hamap Endonuclease III-like protein 1 [NTHL1]. 140 373 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Cme07g01894 390 MobiDBLite consensus disorder prediction 26 60 - -
Cme07g01894 390 MobiDBLite consensus disorder prediction 369 384 - -
Cme07g01894 390 SMART endo3end 189 349 IPR003265 GO:0006284
Cme07g01894 390 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 70 390 - -
Cme07g01894 390 Gene3D Hypothetical protein; domain 2 172 283 - -
Cme07g01894 390 Pfam HhH-GPD superfamily base excision DNA repair protein 186 317 IPR003265 GO:0006284
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01894 K10773 NTH; endonuclease III [EC:4.2.99.18] - csv:101212347 700.664
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01894 Cme-Chr7:24235871 Cme11g02382 Cme-Chr11:30758498 1.19E-07 dispersed
Cme07g01894 Cme-Chr7:24235871 Cme11g01885 Cme-Chr11:27023428 5.35E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1201 . . . . . . . . . . . Cma14g01469 . Car14g01306 . . Cpe03g01238 Bhi01g02693 . . . Hepe05g1227 . Lcy11g1140 . . . . . . . . . . Cone11ag0617 . . . Cme07g01894 . . Bda11g00458 . . . . Bma06g01418 . . Cmo14g01508 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010237 1 4 0 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 32