Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01902 ATGCATATTTTTAAATTCTTAAATTGGATCTCCTTCTTCTTCCTTTGTTTCTCTCTCTTTTATTACTACCGCACTGCCCAAATCTCTCCCTATTTCCTTCTCAATATGGCTCAAGATTCCTCCAACTCCGTTTTTGATTTCACTGTCAAGGATATTCGTGGGAATGATGTGAGCCTTAGTCAATACAAGGGGAAAGTTCTTCTGATAGTGAATGTTGCTTCTGAGTGTGGTTTAACGAAATCAAACTACAAGGAGCTGAATGTATTGTATGACAAATACAAAAATCAAGGTTTTGAGATATTGGCATTTCCTTGCAATCAGTTTGCAGGACAAGAGCCAGGAAACAATGAACAGATTCAGGAAACTGTATGCACAAGGTTCAAAGCTGAATTCCCCATCTTTGATAAGGTTGACGTTAACGGGAAGGATGCAGCACCAATATATAAATTCCTGAAATCACAAGAGGCTGGCCGTGGACTATTTGGCGATGCCATCAAGTGGAACTTCACAAAGTTCTTAGTGAACAAAGAAGGGAAGGTAGTTGGTAGATATGCTCCTACCACCTCGCCTTTCAAGATTGAGAAAGACATCGAGAATCTATTGCAATCTGCTTGA 615 39.67 MHIFKFLNWISFFFLCFSLFYYYRTAQISPYFLLNMAQDSSNSVFDFTVKDIRGNDVSLSQYKGKVLLIVNVASECGLTKSNYKELNVLYDKYKNQGFEILAFPCNQFAGQEPGNNEQIQETVCTRFKAEFPIFDKVDVNGKDAAPIYKFLKSQEAGRGLFGDAIKWNFTKFLVNKEGKVVGRYAPTTSPFKIEKDIENLLQSA 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24287646 24290729 + MELO3C017729.2.1 Cme07g01902 333918

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01902 204 ProSitePatterns Glutathione peroxidases signature 2. 101 108 IPR029760 -
Cme07g01902 204 ProSitePatterns Glutathione peroxidases active site. 64 79 IPR029759 -
Cme07g01902 204 PIRSF Glutathion_perox 17 204 IPR000889 GO:0004602|GO:0006979
Cme07g01902 204 Pfam Glutathione peroxidase 44 152 IPR000889 GO:0004602|GO:0006979
Cme07g01902 204 ProSiteProfiles Glutathione peroxidase profile. 34 204 IPR000889 GO:0004602|GO:0006979
Cme07g01902 204 Gene3D Glutaredoxin 31 204 - -
Cme07g01902 204 SUPERFAMILY Thioredoxin-like 43 201 IPR036249 -
Cme07g01902 204 CDD GSH_Peroxidase 43 197 IPR000889 GO:0004602|GO:0006979
Cme07g01902 204 PANTHER GLUTATHIONE PEROXIDASE 28 203 - -
Cme07g01902 204 PANTHER GLUTATHIONE PEROXIDASE 28 203 IPR000889 GO:0004602|GO:0006979
Cme07g01902 204 ProSiteProfiles Thioredoxin domain profile. 38 202 IPR013766 -
Cme07g01902 204 PRINTS Glutathione peroxidase family signature 62 79 IPR000889 GO:0004602|GO:0006979
Cme07g01902 204 PRINTS Glutathione peroxidase family signature 98 114 IPR000889 GO:0004602|GO:0006979
Cme07g01902 204 PRINTS Glutathione peroxidase family signature 165 174 IPR000889 GO:0004602|GO:0006979
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01902 K00432 gpx, btuE, bsaA; glutathione peroxidase [EC:1.11.1.9] - csv:101213073 399.823
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00134 Cme-Chr7:878626 Cme07g01902 Cme-Chr7:24287646 6.49E-43 dispersed
Cme07g01902 Cme-Chr7:24287646 Cme09g01754 Cme-Chr9:22026138 1.68E-76 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1191 . . . . . Bpe14g01042 . . . . Cma06g01662 . Car06g01405 . . . . . . . . . . . . . . . . . . Cone14ag0577 . . . . . . Cme07g01902 . Blo07g00091 Bda11g00464 . . Bpe13g00735 . Bma06g01422 . Cmo06g01657 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000163 11 8 6 9 6 6 7 6 6 5 4 6 8 5 6 8 6 11 3 6 6 7 6 5 5 6 5 14 6 5 198