Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01904 ATGGGAAGTGATTTCTTTAGCCAATCTGAAACGTGGGTTTCTTCCGTTAACGGAATTCGAGAAGACCCAGATGATGAAACTTCCCTTGAAGAAGGTGAAGGAATTGGGTCGGATTCGGATTTCGACGAGTCGGTTCAAATGGGGGCGAAGAAGAGGATGATGATGAAGAAGCGGAATCAGGTTTTGCTTGAAGGTTTTGTTGAGGATGAGGATGATTTGATGAGGACCAAGAGCTTGACGGATGAGGATCTTGATGAACTTAAAGGCTGTGTAGATCTAGGCTTTGGTTTTAGCTACGATGAGATTCCGGAGCTCTGTAACACTCTGCCGGCTTTGGAGCTCTGTTATTCCATGAGCCAGAAGTACATGGACGATCACCAGAAGTCGCCGGAGAGTTCGCCGGCTTCGGCAGTTCCCGCGGACTCTTGCTCGTCTGTGTCGAGTCCGATTGCGAATTGGAAGATCTCCAGTCCTGGTGATCATCCAGAAGATGTTAAAGCAAGGCTCAAATTTTGGGCTCAGGCAGTGGCATGTACTGTTAGACTATGCAACTAA 555 47.75 MGSDFFSQSETWVSSVNGIREDPDDETSLEEGEGIGSDSDFDESVQMGAKKRMMMKKRNQVLLEGFVEDEDDLMRTKSLTDEDLDELKGCVDLGFGFSYDEIPELCNTLPALELCYSMSQKYMDDHQKSPESSPASAVPADSCSSVSSPIANWKISSPGDHPEDVKARLKFWAQAVACTVRLCN 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24298304 24300738 - MELO3C017731.2.1 Cme07g01904 333920

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01904 184 MobiDBLite consensus disorder prediction 1 16 - -
Cme07g01904 184 MobiDBLite consensus disorder prediction 1 43 - -
Cme07g01904 184 MobiDBLite consensus disorder prediction 24 38 - -
Cme07g01904 184 Pfam Protein of unknown function (DUF1685) 79 135 IPR012881 -
Cme07g01904 184 PANTHER EXPRESSED PROTEIN 42 184 - -
Cme07g01904 184 PANTHER OSJNBA0071G03.3 PROTEIN 42 184 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01904 - - - csv:101213317 322.398
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01420 Cme-Chr2:20499586 Cme07g01904 Cme-Chr7:24298304 3.43E-26 dispersed
Cme03g00667 Cme-Chr3:11563985 Cme07g01904 Cme-Chr7:24298304 7.30E-73 dispersed
Cme05g01236 Cme-Chr5:20014714 Cme07g01904 Cme-Chr7:24298304 1.60E-25 dispersed
Cme07g01904 Cme-Chr7:24298304 Cme08g00569 Cme-Chr8:3603921 9.72E-13 dispersed
Cme07g01904 Cme-Chr7:24298304 Cme11g00317 Cme-Chr11:3348473 1.09E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1193 . . . . . . . . . . Cma06g01664 . Car06g01406 Car14g01297 . Cpe08g00077 Cpe03g01232 . . . . . . . . . . . . . . Cone14ag0576 . . Cone11ag0614 . . . Cme07g01904 . Blo07g00090 . . . . . Bma06g01421 . Cmo06g01658 . . . Car08g00063 . . Cpe17g00989 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001176 2 2 2 2 2 2 5 2 2 2 1 2 3 2 2 4 2 3 4 2 2 2 2 2 2 2 2 8 6 1 77