Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01915 ATGGAGGAAGTATGGACAAAGGCTGTGAAGAACAACAAATTCCCAAGAAGCTACTATAGATGTACACACCAAGGTTGCAAAGTGAAGAAGCAAGTTCAGAGGCTAACAAGAGATGAAGGGGTGGTGGTGACGACTTATGAAGGCATTCATTCTCATCCCATTGAGAAATCCACTGATAATTTTGAGCATATTTTGTCTCAAATGCAAATCTACACTTCTTATTAA 225 39.11 MEEVWTKAVKNNKFPRSYYRCTHQGCKVKKQVQRLTRDEGVVVTTYEGIHSHPIEKSTDNFEHILSQMQIYTSY 74
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24377154 24378652 - MELO3C017743.2.1 Cme07g01915 333931

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01915 74 PANTHER WRKY TRANSCRIPTION FACTOR 75-RELATED 6 71 - -
Cme07g01915 74 Pfam WRKY DNA -binding domain 7 53 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme07g01915 74 Gene3D WRKY domain 5 54 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme07g01915 74 SMART WRKY_cls 7 54 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme07g01915 74 ProSiteProfiles WRKY domain profile. 1 55 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme07g01915 74 SUPERFAMILY WRKY DNA-binding domain 7 54 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme07g01915 74 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 6 71 IPR044810 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01915 - - - cmo:103494564 145.591
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01785 Cme-Chr6:20817270 Cme07g01915 Cme-Chr7:24377154 6.72E-39 dispersed
Cme07g01915 Cme-Chr7:24377154 Cme06g00148 Cme-Chr6:896741 4.28E-19 dispersed
Cme07g01915 Cme-Chr7:24377154 Cme07g01613 Cme-Chr7:21921994 2.43E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1275 . . Bda01g02132 . Bpe13g00817 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00303 . . . . . . . . . Bma06g01340 . . . . . . . . Cpe03g01223 . . . . . . . . . . . . . . . . Chy07g01479 Cme07g01915
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000978 3 3 1 1 3 3 4 3 3 2 3 3 3 3 3 3 3 3 3 3 2 3 3 2 3 3 2 3 4 3 84
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41696 PF03106 WRKY 2.10E-17 CL0274 Cme TF