Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01925 AACCCACAGGTCAACGTGAGAGTGGAAAAATGGAAGCTTGCAGCAAGCGGTGTGAAGAAGCTATGGAGTCGAAGAGCAATCCCAACTTCAACTCTCTTACTCTTCTTCACAACGCTCTCATCATCACCATGGATTCCCACAGTCGAGTCTTCCGAAACGGCGGAATTGCTATCTCCGGTGACAAAATCAAGGCCATCGGTCACTCTTCCGAAATTCTCCACCAATTCTCTGCTTCTGCTCACCACATTATTGATCTTCATTCTCAAATCTTGCTCCCGGCAGCTTGCGAGGAGCATAGCCGACGATGTGGATTTGATGACTTGGTTGCACCATCGTATTTGGCCCTACGAATCCAACATGACTGAGGAAGATTCCTACATTTCCACTTTGCTTTGTGGTATTGAACTCATTCATTCGGGTGTAACATGCTTCGCTGAGGCAGGGGGTCAACATGTATCCGGGATGGCTAAGGCTGTAGAGTTGTTGGGTTTACGGGCGTGCTTAACTCAGTCAATAATGGACTGTGGGGAAGGGTTGCCAGCTCCTTGGGCTGCCGTAACAACTGATGATTGCATTCAGTCTCAAAAGGAGCTTTACAAGAAGCACCATAACACAGCAGATGGGCGCATCAGAATATGGTTTGGTATCAGACAAATTATGAATGCAACAGATCGTCTATTGATTGAAACAAGGGATAATGCATTAGAACTCGAAACCGGGATCCACATGCATGTTGCAGAGATAGCCTATGAGAACCTGAAAGTGATAAATGAACGAAAAGTTGATCATGGAACAGTTACGTACTTGGAGAAAATACAGTTTCTGGGAAAGAATTTACTTTCTGCACATACTGTTTGGGTCAATGACAATGAGATTAGTTTTCTTTCAAGGAATGGGGTCAAAGTATCCCACTGTCCAGCTTCTGCAATGAGAATGCTTGGTTTTGCACCTATCAGAGAGATGCTTGATGCTGGTATTTGTGTTTCCATTGGAACAGATGGAGCACCATCAAATAATCGAATGAGCATAGTTGATGAGATGTACCTTGCATCGCTGATTAATAAAGGCCGGGAAGTCTATGCAAATGGAACAACCAACCCCTCTGTTCTCCCTGCTGAAGTAGTCCTACAAATGGCGACAATAAATGGAGCAAAATCAGTACTTTGGGATAATGAAATAGGATCACTTGAAGTTGGGAAGAAGGCGGATATGGTTGTGATCAACCCTTCCTCTTGGTCCATGGTTCCTTACCATGACAGCATTTCCTGCCTTGTCTACAGTATGAGAACTGAAAATGTCATCTCTGTAATGTGTAATGGGCAGTGGATAATGAAAGATAAGAAGATCATCAATGTGAATGAGGAAGATGTAATTCTGATGGCAAAACAAGCTTCCAGGGAACTACTTGAGAGAGCAGGAATAAGAATTCCAAACAGAATGAATTTCATCTAA 1452 43.6 NPQVNVRVEKWKLAASGVKKLWSRRAIPTSTLLLFFTTLSSSPWIPTVESSETAELLSPVTKSRPSVTLPKFSTNSLLLLTTLLIFILKSCSRQLARSIADDVDLMTWLHHRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSGMAKAVELLGLRACLTQSIMDCGEGLPAPWAAVTTDDCIQSQKELYKKHHNTADGRIRIWFGIRQIMNATDRLLIETRDNALELETGIHMHVAEIAYENLKVINERKVDHGTVTYLEKIQFLGKNLLSAHTVWVNDNEISFLSRNGVKVSHCPASAMRMLGFAPIREMLDAGICVSIGTDGAPSNNRMSIVDEMYLASLINKGREVYANGTTNPSVLPAEVVLQMATINGAKSVLWDNEIGSLEVGKKADMVVINPSSWSMVPYHDSISCLVYSMRTENVISVMCNGQWIMKDKKIINVNEEDVILMAKQASRELLERAGIRIPNRMNFI 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24471528 24477609 - MELO3C017750.2.1 Cme07g01925 333941

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01925 483 CDD ATZ_TRZ_like 95 449 - -
Cme07g01925 483 SUPERFAMILY Metallo-dependent hydrolases 95 395 IPR032466 -
Cme07g01925 483 SUPERFAMILY Composite domain of metallo-dependent hydrolases 372 474 IPR011059 GO:0016810
Cme07g01925 483 Gene3D - 93 387 - -
Cme07g01925 483 PANTHER AMINOHYDROLASE SSNA-RELATED 91 482 - -
Cme07g01925 483 Pfam Amidohydrolase family 103 442 IPR006680 GO:0016787
Cme07g01925 483 Gene3D Urease, subunit C, domain 1 400 458 IPR011059 GO:0016810
Cme07g01925 483 PANTHER AMINOHYDROLASE SSNA-RELATED 91 482 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01925 - - - csv:101216449 777.319
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1308 . . . Bda11g00382 Bpe13g00820 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00292 . . . . . Bda11g00382 . . . Bma06g01337 . . . . . . . . Cpe03g01215 . . . . . . . . . . . . . . . . Chy07g01487 Cme07g01925
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009548 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 33