Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01937 ATGGATCATATTGTACTGGTTCAATTAAAACTTTGCTCCTTAGACTCTGAGGCAGAAGTGATGGAGGTAGAAACGATGATGGAACAGAAGAGGAGTCTATGCTCGGTTGATGAGAGCGCTCTCACTTCACTGACACCCAAACGGCACAAGACTGATTTCTCTATCTCCTCTAAGGAGAGGAAAGACAAACTGGGTGAACGAATTATGGCATTGCAACAACTTGTTTCTCCATACGGAAAGACAGATACGGCATCTGTTCTACTGGAAGCAATGGAATATATCCAATTCCTTCACGAGCAAGTCAAGGTGTTGAGTGCTCCATATCTCCAAAGCACACCCACTGTTTTGTTGCAGGAGGTGGAGCCATGCAGCCACAGCCTGAGGAGCAGAGGCCTTTGTCTTGTTCCAATCTCGTGTACTGCTGGAGTTGCACGGAGCAACGGTGCGGATATTTGGGCTCCCGTGAAGACAATTTCTCCCAAATTTGAGAAGCACATCTCACCATTCAATTGA 513 46.39 MDHIVLVQLKLCSLDSEAEVMEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24558779 24563713 - MELO3C017761.2.1 Cme07g01937 333953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01937 170 Gene3D - 46 114 IPR036638 GO:0046983
Cme07g01937 170 PANTHER TRANSCRIPTION FACTOR BHLH113-LIKE ISOFORM X1 19 154 - -
Cme07g01937 170 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Cme07g01937 170 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 19 154 - -
Cme07g01937 170 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 111 IPR036638 GO:0046983
Cme07g01937 170 SMART finulus 56 103 IPR011598 GO:0046983
Cme07g01937 170 CDD bHLH_AtbHLH_like 54 105 IPR045239 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00096 Cme-Chr1:681451 Cme07g01937 Cme-Chr7:24558779 2.68E-33 dispersed
Cme07g01937 Cme-Chr7:24558779 Cme08g00886 Cme-Chr8:5813284 6.95E-28 dispersed
Cme07g01937 Cme-Chr7:24558779 Cme08g00357 Cme-Chr8:2256998 5.94E-31 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01937 - - cmo:103494587 300.441