Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01945 ATGGGAAAGAAAGGCAGTTGGTTTTCAGTTATAAAGAGATTTTTCACTTGTCAGTCAGGAGAGGTTCATGAGAATAACAGCAGAAATGAAAGGAAAGGAGATGGGAAAGGAGAGTCCACTTCTTTCATTCCTATCTTTAGGAAGCCGAGCAGTGTCGAGAAAATCTTTAGTGATTTTGAGAGGGAGCAGCAAATAGTAGCTTTCCGGCCTCCGGCTCCTGAACGGCCATCTACACCACCCTATATACCTTCTCAACCAGCTCCCACTCGTGCTCCTTCTCCTCCTAGAGCTGCTCCTGCCAAAGAACCATCTCCAAAGATTTCCCCTCCTACAGCTGCTCCTGCCAAAGAACCATCTCCCAAGGTTCCTCCTCCTAGAGTTGCTTCTCCTCCTCGAGCTTGCTCATCATCAACAGTTGTCGATCATCACAAGGAAGTCAAGAACATTCCAACCATTGTCGATCCTCAAGAGGAAGTCACCCCCATTCCAACGGCTGTGAATCATCGCGAGGAAGTCAGCTACATTCCAAAACCAACCGTGACGAACCATCATTCTTCTGCTACTAAGATCCAAGCAACCTACAGAGGTTATGTGGCGAGGAAAAGCTTCAAAGCATTGAAGGGTCAGGTGCGGCTTCTAGGTGTTATACGAGGGAATAACGTGAGACGCCAGACATTGAATGCTAAGAAACAGATGCAACTTTTGGTTCGAGTGCAATCAGCTATACAATCACGACGAATTGAAATGCTGGAAAACCAGAGGCAACTCCAGGATCATCCCAATGATAAAGAAGCTCACAGTACCTTTGATGCATCCGAGGGAGGTAACCATGAAGACTGGGATGAAAGCTCAATAACAAAGGAGGAAAAAGATGCCCGATTGCAGAGGAAGGTAGAAGCAGCCATTAAACGAGAACGTGCAAGGGCATATGCATACTCCCAATCCCACCAGAGAACCACTCCAAGATTGGGACAAGATTCTCAAATGGATACTTGCGCCATGGGAGTTCCAAGGTGGTTGAAATGGTTAGAAGGTCAGTTACCTACTGAAGGTTCTCCAAAGCATCCTCTACCAAGACCTTTAACTCCCCAGCCGGAGCAGAAGTCAAGCCCACGGTCTCCTTCAAGCAACATTAGACGACAGAATTTCGGCTTAGATGTTAGGGATACTCCCACACCAAAGTCCACAAAATCAACAGCATTCTCAAATGCAAAGCCTGCTCGGTCACCACCCCGATTGAGAACCCCTCAAACAGCAAGGTCAACCATCTCCAACGATTCGAGATCACGAGGCAGCCGAGCATTGTCTCCTTTCGACATGAGGTTAAAGGATGATGACAGCCTTGTTAGCTGCCCTCCATATATGGCACCACACTATATGACTCCTACAATTTCGGCCAAAGCAAAAGTTCGAGCACGTAGTAACCCAAGGGAGAGATTTCCAGGTACGCCAAGGAGCGACGCATCTAGCAGAAGACAATCATTTCCTCCAACGCAAAGTGTTGGATCGTATAGAAACAGAGGTTTGATGTCGTCACCGAAAGATCATGCAACATTAGATGACAACCAATCTTTGCGATCGGTCGGGAACTTCAGCTTTGCTTCACTACCAACTGGAGTTAGAAGGAAACCATTTAACAGATTTGTGTGA 1650 46.91 MGKKGSWFSVIKRFFTCQSGEVHENNSRNERKGDGKGESTSFIPIFRKPSSVEKIFSDFEREQQIVAFRPPAPERPSTPPYIPSQPAPTRAPSPPRAAPAKEPSPKISPPTAAPAKEPSPKVPPPRVASPPRACSSSTVVDHHKEVKNIPTIVDPQEEVTPIPTAVNHREEVSYIPKPTVTNHHSSATKIQATYRGYVARKSFKALKGQVRLLGVIRGNNVRRQTLNAKKQMQLLVRVQSAIQSRRIEMLENQRQLQDHPNDKEAHSTFDASEGGNHEDWDESSITKEEKDARLQRKVEAAIKRERARAYAYSQSHQRTTPRLGQDSQMDTCAMGVPRWLKWLEGQLPTEGSPKHPLPRPLTPQPEQKSSPRSPSSNIRRQNFGLDVRDTPTPKSTKSTAFSNAKPARSPPRLRTPQTARSTISNDSRSRGSRALSPFDMRLKDDDSLVSCPPYMAPHYMTPTISAKAKVRARSNPRERFPGTPRSDASSRRQSFPPTQSVGSYRNRGLMSSPKDHATLDDNQSLRSVGNFSFASLPTGVRRKPFNRFV 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24617306 24621118 - MELO3C017768.2.1 Cme07g01945 333961

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01945 549 MobiDBLite consensus disorder prediction 63 140 - -
Cme07g01945 549 Pfam Protein of unknown function (DUF4005) 415 527 IPR025064 -
Cme07g01945 549 ProSiteProfiles IQ motif profile. 183 211 IPR000048 GO:0005515
Cme07g01945 549 MobiDBLite consensus disorder prediction 72 130 - -
Cme07g01945 549 MobiDBLite consensus disorder prediction 368 405 - -
Cme07g01945 549 MobiDBLite consensus disorder prediction 346 439 - -
Cme07g01945 549 MobiDBLite consensus disorder prediction 486 507 - -
Cme07g01945 549 SMART iq_5 182 204 IPR000048 GO:0005515
Cme07g01945 549 PANTHER IQ-DOMAIN 13 1 546 - -
Cme07g01945 549 MobiDBLite consensus disorder prediction 465 523 - -
Cme07g01945 549 MobiDBLite consensus disorder prediction 312 327 - -
Cme07g01945 549 MobiDBLite consensus disorder prediction 18 44 - -
Cme07g01945 549 MobiDBLite consensus disorder prediction 252 293 - -
Cme07g01945 549 MobiDBLite consensus disorder prediction 307 328 - -
Cme07g01945 549 Gene3D - 167 210 - -
Cme07g01945 549 MobiDBLite consensus disorder prediction 353 367 - -
Cme07g01945 549 Pfam IQ calmodulin-binding motif 184 204 IPR000048 GO:0005515
Cme07g01945 549 MobiDBLite consensus disorder prediction 414 432 - -
Cme07g01945 549 PANTHER IQ-DOMAIN 5-RELATED 1 546 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01945 - - - csv:101221582 941.028
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme07g01945 Cme11g02434 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01945 Cme-Chr7:24617306 Cme11g02434 Cme-Chr11:31128618 1.73E-107 dispersed
Cme07g01945 Cme-Chr7:24617306 Cme08g02328 Cme-Chr8:30198726 1.74E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1327 . Blo12g00275 Bda03g00960 . Bpe04g00888 Bpe14g00792 Bma04g00856 . Cmo08g00188 . Cma06g01692 . . . . . . Bhi01g03674 Tan10g1432 . . . . . Cla06g00104 Cam06g0111 Cec06g0116 Cco06g0115 Clacu06g0117 Cmu06g0115 Cre06g0885 Cone14ag0616 Cone15ag0623 . Cone11ag0674 . . . Cme07g01945 . . . Bda13g00537 . . . . Sed07g0076 . . . . Car08g00167 . . Cpe17g01077 Bhi12g02466 Tan06g1528 Cmetu11g0606 . . . . . . . . . . . . . . Cme11g02434
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004543 2 4 0 2 2 1 2 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 0 4 5 0 42