Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01946 ATGGAAAGTCATAGCAAAGCTAATAGTCGGGAGGATCTAGAGGTTGACATAATTGAAGGTTCGAATAAAACTGATCCCAAATTTTGTGGGAAAGAAGACCCTGATGCAACTGAATATTCAAGCTCATTCGGGGAGACTTCTGATGCGGATAATTGTTCAGGATTCAGCGAAGGAGAAGTAGAAACTCAATTTTTTGGAGACATCGGCTTGCCACCCACATTTGGTTCCTTTAGCAGCACGCTTCAAATAAGGAAGAGGAAGTTAACAGCTCACTGGCAAAACTTCATCCGCCCTCTAATGTGGCGCTGCAAGTGGACAGAATTGAGAATTAAAGAAATTGAGTCACAGGCATTGAAATATTCCAGAGCACTTGCAGTGTATGAACAAGAAAAAGTTCCTGCCCATGATCCAACAATGGAAGAATTTTTTTCAAAAACATTTCCATTTTCTAGCCAATATTACAGAAGAAAGGCAATGAAACGAAGAAAACGGAAGAAAATTGAAGATGCAATTGATATATCATCCTATATGTCACATCATAACCTTTTCTCATACTTTGAAAATAAGAGATCTGAACTAGATGGTACTTCTGTAGCTGATGAATTTGCAAATCCAGTGAAAGTGGAGAAAAATGCTGATTCTGATGACAAGTTTGGGATTAATAACGACTCCATTCTTGAGTCCAGAGACACCGATAACTCTCTGGAACAAGTACTCTGGAAAATTGAAGTGGTGCATTCTCGACTACACAAACTAAAGGGTCAAATGGATAAGGTGATGTCAAAAAATGCTGCAATATTTTCTTCCTCAGAGAATTTGAGCCTTCTTGCACCTTGTGAGGCACAGACCAGCTCTGCCCCTAGTCCTACATTTTCTGCTGGAAATGGAGAATTATCAGTCAGTGTTATGTGTGCATCGACTCAACGTATATCAGAATGTGATATTGGGGATCTAATGAAGCCTGAAAGTGCTATTTCAAGCTTTGGGGATGCAATATTAGTTCCTGATATTATTGAAAGTACAGTTGGGAATTTGACTGCTACTGATGTTTCACTTCCTCAACCCCAAATTGGGGACTCAACTGAGGCTATTGTTGATAATGTGCTGACACACAACGAGGTGGTTGAGGCAGAGAGAAACACGGATAGCAAGGTTGTTGCACAGCCAGTTGAAAAGCATCATGAACCAGAAAAAGTCAGCCAAGGGGAAGGCACCAGCCTCAGCTCAAATCCAACAACACAACCTGATCCTATGGGAAAAGCTTTGGTCTCTGAGGAACAATCAGCTCTTAAGAAATGTTTAGCTTCAGATATCAACTTCCCCAGGAACAAGAGAAAACGAGGGGAAAGAAAAGCGGGACCAGGGAGTTGGAACAAGAAACATTCGAGCGAACCCGATAGTCAGTAA 1407 41.08 MESHSKANSREDLEVDIIEGSNKTDPKFCGKEDPDATEYSSSFGETSDADNCSGFSEGEVETQFFGDIGLPPTFGSFSSTLQIRKRKLTAHWQNFIRPLMWRCKWTELRIKEIESQALKYSRALAVYEQEKVPAHDPTMEEFFSKTFPFSSQYYRRKAMKRRKRKKIEDAIDISSYMSHHNLFSYFENKRSELDGTSVADEFANPVKVEKNADSDDKFGINNDSILESRDTDNSLEQVLWKIEVVHSRLHKLKGQMDKVMSKNAAIFSSSENLSLLAPCEAQTSSAPSPTFSAGNGELSVSVMCASTQRISECDIGDLMKPESAISSFGDAILVPDIIESTVGNLTATDVSLPQPQIGDSTEAIVDNVLTHNEVVEAERNTDSKVVAQPVEKHHEPEKVSQGEGTSLSSNPTTQPDPMGKALVSEEQSALKKCLASDINFPRNKRKRGERKAGPGSWNKKHSSEPDSQ 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24633580 24638797 - MELO3C017769.2.1 Cme07g01946 333962

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01946 468 MobiDBLite consensus disorder prediction 375 468 - -
Cme07g01946 468 PANTHER ELONGATION FACTOR 5 467 - -
Cme07g01946 468 Coils Coil 110 130 - -
Cme07g01946 468 MobiDBLite consensus disorder prediction 375 400 - -
Cme07g01946 468 PANTHER ELONGATION FACTOR 5 467 - -
Cme07g01946 468 MobiDBLite consensus disorder prediction 401 417 - -
Cme07g01946 468 CDD AT4G37440_like 8 262 IPR038745 -
Cme07g01946 468 MobiDBLite consensus disorder prediction 438 468 - -
Cme07g01946 468 MobiDBLite consensus disorder prediction 1 50 - -
Cme07g01946 468 MobiDBLite consensus disorder prediction 1 34 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01946 - - - csv:101221808 889.797
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00052 Cme-Chr6:364248 Cme07g01946 Cme-Chr7:24633580 1.04E-60 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1324 . . . . . Bpe14g00791 . . . . Cma06g01693 . Car06g01434 . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g01946 . . . Bda13g00538 . . . . . Cmo06g01684 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012864 1 1 1 1 1 0 1 1 0 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 2 2 2 28