Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01957 ATGAAGAGCAGTGGCAATAACAACAGTCTCGACGGTGAAGATCCACAACAAAAACAGAGCACAATCTCATCAACTCTCGATTCCAGATTCAGTCAGACCCTCAGAAATGTACAAGGGCTACTTAAAGGCCGTAGTATTCCTGGTAAAGTATTGCTAACTAGAAGATCAGATGTACTCAGCCCATCAAATGTATCAGATAAATCATTGAATTATTCAAGGAGCTTTTCGGATATCGATACTGGTACAAGCAATCGCATTGCCCAATCTGAGGAGGAAGATGTTCAGATTATAAAAAATAATACAATTCTTAATAAGTCAAAATCATCGACCTCTAACACTGAGGATCTTACTAAAGAAGTCGAAAAGCCAATAATGGGTGCTAGAGCAACAGATTCTGCAAGGGTCATGAAGTTCACAAAGCTGCTCTCAGGGACAACAATCATATTAGACAAGTTGCGAGAGTTGGCTTGGAGTGGCATTCCACCTTATATGCGTCCAAATATATGGAGGCTTCTTTTGGGCTATGCACCACCTAATTCAGATAGAAAGGAGGGAGTTCTACGAAGAAAGAGGCTTGAGTATCTTGACAGCGTTGCACAGTTCTATGACATTCCTGATACTGAACGTTCTGATGATGAGATAAACATGCTTCGCCAGATTGCCGTTGATTGTCCTAGAACTGTACCTGATGTTGCTTTCTTTCAACAAGCACAAGTTCAGAAATCTTTGGAGCGTATTCTCTATACTTGGGCTATTCGGCATCCTGCAAGTGGATACGTTCAGGGAATAAATGATCTTGCCACTCCATTTTTAGTTGTTTTCTTGTCCGAATACTTAGAAGGTGGGGTTGAGAAATGGTCGATCTCTGATCTATCTCCTGACAAGATCACAAACATTGAGGCAGATTGCTACTGGTGTCTATCTAAATTACTTGATGGTATGCAAGATCATTACACGTTTGCACAACCGGGAATTCAGAGACTTGTATTTAAGTTGAAGGAACTGGTTAGGAGGATTGATGAACCTGTTTCAAGACACATGGAGGAGCAGGGTCTGGAGTTTCTTCAATTTGCTTTTCGGTGGTTCAACTGTCTTTTGATTCGCGAGATTCCTTTCCATCTTGTTACCCGGTTATGGGATACTTATCTTGCGGAAGGGGATTCATTGCCAGATTTCCTTGTCTACATATTTGCCAGTTTTCTTTTGACGTGGTCTGAACAGTTGCAGAAACTTGATTTTCAAGAATTGGTGATGTTTCTCCAGCATGTTCCAACTCAAAATTGGACTCATCAAGAGCTTGAGATGGTGCTTTCAAGAGCATACATGTGGCACAGTATGTTCAACAATTCTCCCAGACACCTTGTTAGTTGA 1371 41.14 MKSSGNNNSLDGEDPQQKQSTISSTLDSRFSQTLRNVQGLLKGRSIPGKVLLTRRSDVLSPSNVSDKSLNYSRSFSDIDTGTSNRIAQSEEEDVQIIKNNTILNKSKSSTSNTEDLTKEVEKPIMGARATDSARVMKFTKLLSGTTIILDKLRELAWSGIPPYMRPNIWRLLLGYAPPNSDRKEGVLRRKRLEYLDSVAQFYDIPDTERSDDEINMLRQIAVDCPRTVPDVAFFQQAQVQKSLERILYTWAIRHPASGYVQGINDLATPFLVVFLSEYLEGGVEKWSISDLSPDKITNIEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSRHMEEQGLEFLQFAFRWFNCLLIREIPFHLVTRLWDTYLAEGDSLPDFLVYIFASFLLTWSEQLQKLDFQELVMFLQHVPTQNWTHQELEMVLSRAYMWHSMFNNSPRHLVS 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24682228 24689879 - MELO3C017779.2.1 Cme07g01957 333973

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01957 456 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 6 453 - -
Cme07g01957 456 PANTHER GTPASE-ACTIVATING PROTEIN GYP1-LIKE 6 453 - -
Cme07g01957 456 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 137 346 IPR035969 -
Cme07g01957 456 SMART tbc_4 156 412 IPR000195 -
Cme07g01957 456 ProSiteProfiles TBC/rab GAP domain profile. 159 386 IPR000195 -
Cme07g01957 456 MobiDBLite consensus disorder prediction 1 27 - -
Cme07g01957 456 Gene3D - 136 187 - -
Cme07g01957 456 Gene3D - 321 456 - -
Cme07g01957 456 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 198 320 - -
Cme07g01957 456 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 322 444 IPR035969 -
Cme07g01957 456 Pfam Rab-GTPase-TBC domain 164 407 IPR000195 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01957 K20360 TBC1D22, GYP1; TBC1 domain family member 2 - csv:101220794 904.434
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00824 Cme-Chr5:10612407 Cme07g01957 Cme-Chr7:24682228 3.85E-32 dispersed
Cme07g01957 Cme-Chr7:24682228 Cme07g01967 Cme-Chr7:24764788 1.58E-13 dispersed
Cme09g02008 Cme-Chr9:23824839 Cme07g01957 Cme-Chr7:24682228 1.02E-07 dispersed
Cme07g01957 Cme-Chr7:24682228 Cme10g00829 Cme-Chr10:5485342 4.53E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1285 . . . . . . . . . . . Cma14g01425 . Car14g01255 . . Cpe03g01198 . . . . . . . . . . . . . . Cone14ag0625 Cone15ag0635 Cone18ag0862 Cone11ag0647 . . . Cme07g01957 . . . . . . . . . . Cmo14g01461 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005593 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 5 1 39