Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01976 ATGGAGGAGTTTACTCCTAATACCAATCTCCACTTTCTTCCTTCGATCAAGCTTTTCCTTTCACTTCTACTCATCAATTCCATCTTCACTTTCCACACTGCTCTCTCTGAAATTTTCTTCGAAGAGCGATTCGAAGATGGATGGAAGAGCCGTTGGGTCTTATCTGACTGGAAAAGAAGTGAAGGGAAAGCAGGGACTTTTAAGCACACCGCCGGAAAATGGGCTGGAGATCCAGATGACAAAGGGGGAAGAATGAAAGAGATGAAAGTTTTGTTTGGAAAAGATGGTGATGATGATTGGTTTGCAGGCATTCAGACTTACAATGATGCTAAGCATTTTGCCATATCTGCAAAGATACCGGAGTTCTCCAACGAGAACAGAACTCTAGTGGTCCAGTATTCTATCAAATTCGAACAGGAGATTGAATGTGGTGGCGGGTACCTTAAGCTTCATTCTGGTTATGTCAATCAGAAGAAATATGGTGGCGATACCCCTTACAGTATGATGTTTGGGCCAGATTTATGTGGTACACAGACGAAAAAACTCCATGCGATCCTTTCTTACCAGGGGCAGAATTATCCCATAAAGAAGGATTTGCAATGTGAAACAGACAAGTTAACTCATTTCTACACATTCATTCTTAGGCCCGATGCTAGTTACAGTATACTTGTTGATAATCGAGAAAGAGATTCTGGAAGCATGTACAGTGATTGGGACATCCTGCCACCTAGGAAAATCAAAGATGTTAAGGCGAAAAAGCCTGCTGACTGGGATGACAGAGAATACATTGAAGATCCTAATGATGTTAAACCAGAGGGATATGATTCAATCCCAGCCGAGATTCCTGATCCGAAGGCTAAAGAGCCTGATACATGGGACGAGGATGAGGATGGCATGTGGAAGGCTCCCAAGGTTCCAAATCCAGCATACAAGGGACCGTGGAAGCGTAAGAAAATCAAGAACCCCAATTACAAGGGAAAATGGAAGACTCCATGGATTGATAATCCAGAGTTTGAGGATGATCCTAATCTTTACGTGCTAAGACCAATAAAGTATGTGGGCATTGAAGTTTGGCAGGTAAAAGCTGGATCGGTTTTTGACAACATTTTGATATGCGATGACCCCCAGTATGCAAAGGAAGTTGTTGATGATACGTTTGCAAGAAATAAGGAGGCTGAAAAGGAAGCTTTTGAGGAAGCAGAAAAAGAAAGGAAGGCTAGGGAAGAAAAGGAGGCTCAAAGGGCTCGAGAGGAAGGTGAAAAGAGAAGAAGGGAGCGAGACTATCGTCATAGAGATAGGAGGCGGCATTATCGAAGGGATCGACATGACTTCGATGACTACGGCCATGTAAGT 1353 43.16 MEEFTPNTNLHFLPSIKLFLSLLLINSIFTFHTALSEIFFEERFEDGWKSRWVLSDWKRSEGKAGTFKHTAGKWAGDPDDKGGRMKEMKVLFGKDGDDDWFAGIQTYNDAKHFAISAKIPEFSNENRTLVVQYSIKFEQEIECGGGYLKLHSGYVNQKKYGGDTPYSMMFGPDLCGTQTKKLHAILSYQGQNYPIKKDLQCETDKLTHFYTFILRPDASYSILVDNRERDSGSMYSDWDILPPRKIKDVKAKKPADWDDREYIEDPNDVKPEGYDSIPAEIPDPKAKEPDTWDEDEDGMWKAPKVPNPAYKGPWKRKKIKNPNYKGKWKTPWIDNPEFEDDPNLYVLRPIKYVGIEVWQVKAGSVFDNILICDDPQYAKEVVDDTFARNKEAEKEAFEEAEKERKAREEKEAQRAREEGEKRRRERDYRHRDRRRHYRRDRHDFDDYGHVS 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24884149 24889768 - MELO3C017801.2.1 Cme07g01976 333992

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01976 451 PIRSF Calreticulin 83 446 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cme07g01976 451 PIRSF Calreticulin 16 93 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cme07g01976 451 Pfam Calreticulin family 41 297 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cme07g01976 451 Pfam Calreticulin family 298 371 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cme07g01976 451 SUPERFAMILY Concanavalin A-like lectins/glucanases 36 256 IPR013320 -
Cme07g01976 451 Gene3D Calreticulin/calnexin, P domain 243 344 IPR009033 GO:0005509|GO:0005515
Cme07g01976 451 PANTHER CALRETICULIN-3 91 437 - -
Cme07g01976 451 PANTHER CALRETICULIN-3 15 82 - -
Cme07g01976 451 MobiDBLite consensus disorder prediction 281 301 - -
Cme07g01976 451 PRINTS Calreticulin signature 164 180 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cme07g01976 451 PRINTS Calreticulin signature 253 266 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cme07g01976 451 PRINTS Calreticulin signature 138 156 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cme07g01976 451 PRINTS Calreticulin signature 352 372 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cme07g01976 451 PRINTS Calreticulin signature 281 303 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cme07g01976 451 PRINTS Calreticulin signature 319 338 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cme07g01976 451 PANTHER CALRETICULIN AND CALNEXIN 15 82 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cme07g01976 451 PANTHER CALRETICULIN AND CALNEXIN 91 437 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cme07g01976 451 SUPERFAMILY P-domain of calnexin/calreticulin 239 354 IPR009033 GO:0005509|GO:0005515
Cme07g01976 451 MobiDBLite consensus disorder prediction 257 306 - -
Cme07g01976 451 ProSitePatterns Calreticulin family signature 2. 168 176 IPR018124 GO:0005509
Cme07g01976 451 Coils Coil 389 427 - -
Cme07g01976 451 MobiDBLite consensus disorder prediction 392 426 - -
Cme07g01976 451 MobiDBLite consensus disorder prediction 257 271 - -
Cme07g01976 451 MobiDBLite consensus disorder prediction 392 433 - -
Cme07g01976 451 Gene3D - 37 413 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01976 K08057 CALR; calreticulin - csv:101203114 737.258
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01561 Cme-Chr5:24886205 Cme07g01976 Cme-Chr7:24884149 2.73E-124 dispersed
Cme07g01976 Cme-Chr7:24884149 Cme12g01558 Cme-Chr12:22992203 4.43E-49 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1236 . . . . . Bpe14g01055 . . . . Cma06g01737 . . . Sed02g0957 . . Bhi01g03729 Tan10g1382 Cmetu07g1340 . Hepe05g1091 . Lcy11g0995 . . . . . . . . . . . . . . Cme07g01976 . Blo07g00110 Bda11g00474 . . . . Bma06g01436 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008608 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 2 1 1 1 1 1 2 1 2 35