Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01977 ATGATCAGGTCATTTGGTTACCGCCTAAAGCTACCATGTTCATCTTTCAGAGCGCATTACAACTATTGTGCTACAAAAAGCAATCTTTGTTATCACTTCTCTGCACAGACTGCTCTGCCTCAGCAATGGACGACGAGTATCGGCGACCCACCGAGGCCAGAGTTCGATTCTCATTCCTATGCTGCTCTGCTCCAAGACTGTATCCAAAGCGGTGATTTAAATTTAGGAAAGCTCATTCATTGTAAGATTGTGAAAGAAGGTGGTTTTTTGGACTTGTTTGCTTTTAATGTTCTTCTCAATGCTTATGTGAAACTTGGGTTGTTGTCGGATGCCAGAAAGGTGTTCGATGAAATGCCGGAGAAAAATACTGTTTCATTTGTGACGCTAATTCATGGGTATGCGCAGTCTAATAAATTCATTGAGGCATTTGAGTTATTTGCCAGACTACACGGTGAAGGTCATGAGCTCAATCCGTTTGTTTTCACTACTGTTTTGAAGTTGCTTGTTAGTATGGAATGGGCGGAATTGGGACGTATTGTCCATGGTTGTGTACTTAAAGTTGGATATGGTTCTAATACTTTTATTGGGACTGCTCTTATCGATGCTTACTCTGTTTCTGGTTGTGTTAGTATGGCTAGAGAAGTATTTGATGGGATTAGTTGTAAGGATATGGTATCTTGGACTGGGATGATTGCTTCTTATGCCGAAAATGATTGTTTCTCTGAAGCTTTGGAATTCTTCTCACAGATGAGGGTAGCTGGATTCAAGCCAAACAATTTTACTTTTGCTGGTGTGCTTAAGGCCTGTCTTGGCCTGCAGAATTTTGATGCAGGGAAGACGGTTCATTGTTCTGTTTTAAAAACAAATTATGAGCGAGATCTTTATGTAGGAGTTGGGCTACTTGAACTGTACACTAGGTGTGGTGATAATGATGATGCTTGGCGAGCGTTTGGGGATATGCCTAAAAACGATGTGATTCCATGGAGTTTCATGATTTCAAGATTTGCGCAAAGTGGTCAATCTGAAAAGGCTTTGGAAATTTTTTGTCAAATGAGGAGAGCTTTTGTTACACCCAATCAATTTACATTTTCTATGACTTACTCTAGCATCCTCCGTGCTTGCGCTACTCTTGCTGCCTTAGAACTTGGACTTCAGGTTCATTGCTTGACAGCTAAAACCATCTATGGCCAAGATATTGCTGTTGGTAATGCTTTGATAGATATGTATGCCAAGTGTGGTAGCATTAAAGATGCTCGTTTTATGTTTGACATGTTGGATCTACGAGACAAAGTTTCCTGGAATGCTATTATCTGTGGATATTCTATGCATGGTCTAGGAGTGGAGGCAATAAAAATGTTTAATCTTATGAAAGAAACAGAGTGCAAACCGGACGAGTTGACTTTTGTTGGTGTCTTGTCAGCCTGTAGTAACACTGGCCGGTTAGATGAAGGAAAACAGTATTTTACTTCTATGAAACAGGATTATGGGATTGAACCATGTATGGAGCATTATACCTGTATGGTGTGGCTTATGGGGAGGTCAGGTAATCTTGATCAGGCCGTGAAATTTATTGAAGATATCCCTTTTGAGCCCAGTGTAATGATTTGGCGTGCTTTACTTGGGGCTTGTGTGATTCACAATGATGTTGAATTGGGAAGAATTTCTGCTCAGCGCGTGCTTGAGTTGGAACCTCGAGATGAAGCAAGCCATGTATTATTGTCCAACATCTATGCAAGGGCGAGAAGGTGGGGTAATGTGGCTTATGTTAGAAAGCATATGAAAAGAAAAGGAGTAAAGAAGGAGCCTGGATTAAGTTGGATTGAGAACCAGGGTAATGTTCATTGTTTCACCGTGGCTGATACTTCGCATGCTGACCTGAAGTTAATCAATGGGATGCTTGAATTTTTAAACATGAAAACCAGGAAAGCAGGGTATTCTCCTCATCTTAATGCTGTACTACTTGATGTGGAAGATGATGAGAAGGAGCGTCTCCTTTGGTTACACAGTGAAAGATTAGCCTTGGCTTTTGGTCTGGTTAGGATGCCCGCTGGATGCCCGATTCGCATAATTAAAAATCTCCGTATTTGTGTTGATTGCCATTCTGTAATTAAGTTAATATCGAAAATTGTTGGGCGTGTTATTATTGTTAGAGACATGAATCGTTTTCATCACTTTGAGAATGGGTCATGCTCTTGTGCTGACTACTGGTGA 2211 40.84 MIRSFGYRLKLPCSSFRAHYNYCATKSNLCYHFSAQTALPQQWTTSIGDPPRPEFDSHSYAALLQDCIQSGDLNLGKLIHCKIVKEGGFLDLFAFNVLLNAYVKLGLLSDARKVFDEMPEKNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEWAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDGISCKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVTPNQFTFSMTYSSILRACATLAALELGLQVHCLTAKTIYGQDIAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETECKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHCFTVADTSHADLKLINGMLEFLNMKTRKAGYSPHLNAVLLDVEDDEKERLLWLHSERLALAFGLVRMPAGCPIRIIKNLRICVDCHSVIKLISKIVGRVIIVRDMNRFHHFENGSCSCADYW 736
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24894226 24896981 + MELO3C017802.2.1 Cme07g01977 333993

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01977 736 Gene3D Tetratricopeptide repeat domain 50 121 IPR011990 GO:0005515
Cme07g01977 736 Pfam E motif 546 608 IPR046848 -
Cme07g01977 736 Gene3D Tetratricopeptide repeat domain 152 278 IPR011990 GO:0005515
Cme07g01977 736 Gene3D Tetratricopeptide repeat domain 403 640 IPR011990 GO:0005515
Cme07g01977 736 Pfam PPR repeat family 222 269 IPR002885 -
Cme07g01977 736 Pfam PPR repeat family 429 476 IPR002885 -
Cme07g01977 736 Pfam PPR repeat family 324 365 IPR002885 -
Cme07g01977 736 Pfam DYW family of nucleic acid deaminases 644 736 IPR032867 GO:0008270
Cme07g01977 736 PANTHER - 155 364 - -
Cme07g01977 736 PANTHER - 365 680 - -
Cme07g01977 736 Pfam PPR repeat 94 122 IPR002885 -
Cme07g01977 736 Pfam PPR repeat 124 153 IPR002885 -
Cme07g01977 736 Pfam PPR repeat 197 217 IPR002885 -
Cme07g01977 736 Pfam PPR repeat 403 424 IPR002885 -
Cme07g01977 736 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
Cme07g01977 736 PANTHER OS01G0913400 PROTEIN-RELATED 57 149 - -
Cme07g01977 736 PANTHER OS01G0913400 PROTEIN-RELATED 155 364 - -
Cme07g01977 736 PANTHER OS01G0913400 PROTEIN-RELATED 365 680 - -
Cme07g01977 736 PANTHER - 57 149 - -
Cme07g01977 736 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 91 125 IPR002885 -
Cme07g01977 736 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Cme07g01977 736 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Cme07g01977 736 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 464 499 IPR002885 -
Cme07g01977 736 Gene3D Tetratricopeptide repeat domain 279 381 IPR011990 GO:0005515
Cme07g01977 736 TIGRFAM PPR: pentatricopeptide repeat domain 431 465 IPR002885 -
Cme07g01977 736 TIGRFAM PPR: pentatricopeptide repeat domain 225 258 IPR002885 -
Cme07g01977 736 TIGRFAM PPR: pentatricopeptide repeat domain 124 157 IPR002885 -
Cme07g01977 736 TIGRFAM PPR: pentatricopeptide repeat domain 94 122 IPR002885 -
Cme07g01977 736 TIGRFAM PPR: pentatricopeptide repeat domain 467 499 IPR002885 -
Cme07g01977 736 TIGRFAM PPR: pentatricopeptide repeat domain 328 359 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01977 - - - csv:101203356 917.531
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01977 Cme-Chr7:24894226 Cme10g00749 Cme-Chr10:4795199 1.69E-57 dispersed
Cme11g01335 Cme-Chr11:20245140 Cme07g01977 Cme-Chr7:24894226 2.50E-50 dispersed
Cme12g01798 Cme-Chr12:24479833 Cme07g01977 Cme-Chr7:24894226 1.76E-29 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1337 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe03g01185 . . . . . . . . . . . . . . . . . Cme07g01977
Vvi9g563 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car08g00580 . Cpe02g01642 . . . . . . . . . . . . . . . . . . Cme07g01977
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010173 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 2 1 1 0 1 26