Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01985 ATGGCTCAGAATGTTTGTGCTAACCAAAATGGTTCGGTGGAGAGCTTGTGCAATAGCCATCAGGATCCACTCAACTGGGGTTTGGCGGCTGATTCCATGAAGGGAAGTCATTTGGATGAGGTGAAAAGGATGGTGGAAGAGTATCGAAGGCCTCTGGTGAAGCTTGGAGGAGAAACTCTCACCATTTCTCAGGTTGCTGCCATTGCCACTCGTGATAATGATGTCGTTGTAGAATTGGCTGAATCTGCAAGGGCTGGCGTCAAAGCTAGCAGCGATTGGGTGATGGAGAGCATGGGTAAAGGCACTGATAGTTATGGTGTCACTACCGGCTTTGGTGCTACTTCCCATAGAAGAACCAATCAAGGTGGAGCTCTTCAAAAGGAGTTGATTCGATTCCTAAATTCTGGCATCTTTGGGAATGGAAGTGAATCGAATCACACTTTGCCTCATTCCGCAACAAGAGCAGCCATGTTGGTGAGAATCAACACTCTTCTGCAAGGGTATTCTGGCATTCGATTCGAGATTTTGGAAGCGATTGCTAATCTCTTGAACCACAACGTCACTCCATGTTTGCCACTTCGAGGAACAATTACTGCTTCTGGAGATTTGGTTCCTTTGTCTTATATTGCGGGGTTGCTTACTGGTCGTCACAATTCAAAAGCTATTGGACCTAATGGAGAAACCCTCGATGCAAAGGCTGCTTTTGAGCAAGCTGGTATTGATTCTGGGTTCTTTGAGTTGCAACCTAAGGAAGGCCTTGCTCTAGTTAATGGCACTGCCGTCGGTTCTGGATTGGCTTCCATTGTTCTCTTTGAGGCAAATATTTTAGCTGTTTTGTCTGAAATTTTATCTGCAATATTTGCTGAGGTGATGCAAGGAAAACCCGAATTCACCGACCATTTGACCCATAAGTTGAAGCACCACCCTGGTCAAATTGAAGCAGCTGCAATCATGGAGCATATTTTAGATGGCAGCTCCTACATGAAAACGGCAAAGAAATTACATGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGTTGGGTCCCTTGATTGAAGTGATTCGTTTCTCCACCAAGTCAATTGAGAGGGAAATTAATTCAGTCAACGACAATCCTTTGATTGATGTTTCAAGAAACAAGGCACTACATGGAGGTAACTTCCAAGGAACGCCGATTGGAGTTTCTATGGACAACACTCGTTTGGCCGTTGCATCCATTGGAAAGCTAATGTTTGCTCAATTTTCAGAATTGGTCAATGATTTTTACAATAACGGTTTGCCTTCTAACCTTTCTGCAAGTAGAAATCCAAGCTTGGATTATGGCTTTAAAGGTGCTGAAATTGCCATGGCTTCATACTGTTCTGAGCTTCAATATCTTGCAAATCCCGTGACAAGTCACGTTCAAAGCGCCGAGCAACATAACCAAGATGTTAACTCTCTTGGTTTAATTTCATCAAGGAAAACAGTTGAAGCGATCGATATTCTTAAACTCATGTCTTCCACATTCTTAGTGGCTTTATGTCAAGCAATTGACTTGAGGCATTTGGAGGAAAACTTGAAGAGCACAGTGAAAAACACAGTTAGCCAAGTAGCAAAAAAAGTGTTGACTACCTCTTCTAATGGCGCACTTCATCCATCAAGATTTTGTGAGAAAGATTTACTCAAAGTTGTCGACAGAGAATACACTTTTGCATACATAGATGATCCATGCAGTGCTACCTACCCGCTTATGCAAAAGCTAAGGCAAATTCTTGTTGAGCATGCACTTAAAAATGGCGATAACGAAACGAACGCGAACACCTCAATCTTCCAAAAGATCGGTGCTTTCGAAGAGGAGTTGAAGGCAATTTTACCAAAGGAGGTTGAAAACGTAAGGTTGGCATATGAGAATGGAAATTCTAAAATTAAAAATCAAATCAAAGATTGCAGGTCTTACCCATTATACAAATTCGTGAGAGAGGAGTTAGGAACAAAATTGCTAACCGGCGAAAAGGTCATTTCTCCAGGAGAAGAGTGCGAGAAGGTATTCACTGCATTAAGTCAAGGAAAAATGATCGACTCCATCTTCGAGTGCTTAAAGGAGTGGAATGGAGCACCCATTCCCATTTGCTAA 2142 42.53 MAQNVCANQNGSVESLCNSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDNDVVVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNSGIFGNGSESNHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAIANLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAIGPNGETLDAKAAFEQAGIDSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTVEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTVSQVAKKVLTTSSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQILVEHALKNGDNETNANTSIFQKIGAFEEELKAILPKEVENVRLAYENGNSKIKNQIKDCRSYPLYKFVREELGTKLLTGEKVISPGEECEKVFTALSQGKMIDSIFECLKEWNGAPIPIC 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24974358 24976725 - MELO3C017810.2.1 Cme07g01985 334001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01985 713 CDD PAL-HAL 58 523 IPR001106 -
Cme07g01985 713 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 18 713 - -
Cme07g01985 713 Pfam Aromatic amino acid lyase 60 535 IPR001106 -
Cme07g01985 713 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 22 703 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cme07g01985 713 PANTHER HISTIDINE AMMONIA-LYASE 18 713 IPR001106 -
Cme07g01985 713 SUPERFAMILY L-aspartase-like 22 713 IPR008948 GO:0003824
Cme07g01985 713 Gene3D - 13 259 IPR024083 -
Cme07g01985 713 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841
Cme07g01985 713 Gene3D Fumarase/aspartase (Central domain) 260 708 - -
Cme07g01985 713 Gene3D - 526 647 IPR023144 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01985 Cme-Chr7:24974358 Cme08g02294 Cme-Chr8:29952626 0 dispersed
Cme08g02296 Cme-Chr8:29958916 Cme07g01985 Cme-Chr7:24974358 0 dispersed
Cme07g01984 Cme-Chr7:24968777 Cme07g01985 Cme-Chr7:24974358 0 tandem
Cme07g01985 Cme-Chr7:24974358 Cme07g01986 Cme-Chr7:24978998 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01985 K10775 - csv:101204574 1381.7