Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01986 ATGGCTTGCCAAAATGGTTCGTCAGAGAGTTTGTGCATGAACGGTCAGGATCCACTCAACTGGGGTCTGGCGGCTGAGTCCATGAAGGGAAGTCATTTGGATGAGGTGAAACGGATGGTGGAAGAGTATCGAAGGCCTCTGGTGAAGCTTGGAGGAGAAACTCTCACCATTTCTCAAGTTGCTGCCATTGCCACTCGTGATAATGATGTCGTTGTGGAATTGGCTGAGTCTGCAAGGGCTGGCGTCAAAGCTAGCAGCGATTGGGTGATGGAGAGCATGGGTAAAGGCACTGATAGTTATGGTGTCACTACGGGCTTTGGTGCTACTTCCCATAGAAGAACCAATCAAGGTGGAGCACTTCAAAAGGAGTTGATTCGATTCCTAAATTCTGGCATTTTTGGGAATGGAAGTGAATCGAATCACACTTTGCCTCATTCTGCAACAAGAGCAGCCATGTTGGTGAGAATCAACACTCTTCTTCAAGGGTATTCTGGCATTCGATTCGAGATTTTGGAAGCGATTGCTAATCTCTTGAACCACAACGTCACTCCATGTTTGCCACTTCGAGGAACAATTACTGCTTCTGGAGATTTGGTTCCTTTGTCTTATATTGCAGGTTTGCTTACTGGTCGTCACAATTCAAAAGCTATTGGACCTAATGGAGAAACCCTCGATGCAAAGGCTGCTTTTGAACAAGCTGGTATTGATTCTGGGTTCTTTGAGTTGCAACCTAAGGAAGGCCTTGCTCTTGTTAATGGCACTGCTGTCGGTTCTGGATTGGCTTCCATTGTTCTCTTTGAGGCAAATATTTTAGCTGTTTTGTCTGAAATTTTATCTGCAATATTTGCTGAGGTGATGCAAGGAAAGCCCGAATTCACCGACCATTTGACCCATAAGTTGAAGCACCACCCTGGTCAAATTGAAGCAGCTGCAATCATGGAGCACATTTTAGATGGAAGCTCCTACATGAAAACGGCAAAGAAACTGCATGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGTTGGGTCCCTTGATTGAAGTGATTCGTTTCTCCACCAAGTCAATTGAGCGGGAAATTAATTCAGTCAATGATAATCCTTTGATTGATGTTTCAAGAAACAAGGCGCTACATGGAGGTAATTTCCAAGGAACGCCGATTGGAGTTTCTATGGACAACACTCGTTTGGCCGTTGCATCCATTGGAAAGCTAATGTTTGCTCAATTTTCAGAATTGGTCAATGATTTTTACAATAACGGTTTGCCTTCTAACCTTTCTGCAAGTAGAAATCCAAGCTTGGATTATGGCTTTAAAGGTGCTGAAATTGCCATGGCTTCATACTGTTCTGAGCTTCAATATCTTGCAAATCCTGTGACAAGTCATGTCCAAAGCGCGGAGCAACACAACCAAGATGTTAACTCTCTTGGTTTAATTTCCTCAAGGAAAACAGCTGAAGCCATCGATATTCTTAAACTCATGTCTTCCACATTCTTAGTTGCTTTATGTCAAGCAATTGATTTGAGGCATTTGGAGGAAAATTTGAAGAGCACGGTGAAAAACACGGTGAGCCAAGTAGCAAAAAAAGTGTTGACTACCTCTTCTAATGGCGCTCTTCATCCATCAAGATTTTGTGAGAAAGATTTACTCAAAGTTGTCGACAGAGAATACACTTTTGCATACATAGATGATCCATGCAGTGCTACCTACCCACTTATGCAAAAACTAAGACAAATTCTGGTTGAGCATGCACTTAAAAATGGCGAGAACGAAACGGACACAAACACCTCAATCTTCCAAAAGATCGGTGCTTTCGAAGAGGAGCTGAAGGCAACTTTACCAAAGGAGGTTGAAAACGTGAGGTTGGCATATGAGAATGGAAATTCTAAAATTGAAAATCAAATCAAGGATTGCAGATCTTACCCAATATACAAATTTGTGAGAGAGGAGTTGGGAACAAGATTGCTAACCGGCGAGAGGGTAATTTCTCCAGGAGAAGAGTGCGAGAAGGTATTCACTGCTTTAAGTCAAGGAAAGATGATCGACTCTATCTTCGAATGCTTGAAGGAGTGGAATGGAGCACCCATTCCTATTTGCTAA 2127 42.74 MACQNGSSESLCMNGQDPLNWGLAAESMKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDNDVVVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNSGIFGNGSESNHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAIANLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAIGPNGETLDAKAAFEQAGIDSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTVSQVAKKVLTTSSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQILVEHALKNGENETDTNTSIFQKIGAFEEELKATLPKEVENVRLAYENGNSKIENQIKDCRSYPIYKFVREELGTRLLTGERVISPGEECEKVFTALSQGKMIDSIFECLKEWNGAPIPIC 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24978998 24981354 + MELO3C017811.2.1 Cme07g01986 334002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01986 708 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 2 708 - -
Cme07g01986 708 CDD PAL-HAL 53 518 IPR001106 -
Cme07g01986 708 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 17 698 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cme07g01986 708 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 190 206 IPR022313 GO:0016841
Cme07g01986 708 Gene3D Fumarase/aspartase (Central domain) 255 703 - -
Cme07g01986 708 PANTHER HISTIDINE AMMONIA-LYASE 2 708 IPR001106 -
Cme07g01986 708 Pfam Aromatic amino acid lyase 55 530 IPR001106 -
Cme07g01986 708 Gene3D - 521 642 IPR023144 -
Cme07g01986 708 Gene3D - 9 254 IPR024083 -
Cme07g01986 708 SUPERFAMILY L-aspartase-like 17 708 IPR008948 GO:0003824
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01265 Cme-Chr3:22254626 Cme07g01986 Cme-Chr7:24978998 0 dispersed
Cme07g01984 Cme-Chr7:24968777 Cme07g01986 Cme-Chr7:24978998 0 dispersed
Cme07g01986 Cme-Chr7:24978998 Cme08g02294 Cme-Chr8:29952626 0 dispersed
Cme07g01985 Cme-Chr7:24974358 Cme07g01986 Cme-Chr7:24978998 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01986 K10775 - csv:101204574 1356.27