Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g02009 ATGGATACAGAGGAAGCTCCATCGACACCGGTGACGCCGGGAACTCCGGGAGCTCCACTGTTTGGACGGGTGAAAGAAAATCAGCATGGAAGTGAGAATGGTAAAAGATCTCTTCTCAAAAGTTGGATCTGTTTCAATGTTGATGATAGTTGGGGGATTGAAGAAGGAGGCTTATCTAAAATAGTCTCTTCTTGTTCATTGCCATACCCTCCTGTTTCACTTGCAAGAAAGGTGGGAGCAGAGTTTATAGGCACTTTGATTCTCATATTTGCCGGAACTGCCACCGCCATAGTGAACCAAAAGACGGAAGGAACCGAAACGTTGATCGGCCTGGCGGCTTCCACCGGCCTTGCAGTGATGATCGTGATCTTGTCAACGGGTCACATCTCCGGAGCCCATCTGAATCCAGCCGTCACCATTGCTTTTGCTGCATTGAAGCAGTTTCCTTGGAAGCATGTGCCATTGTATATTGGAGCTCAAATGGTGGCTTCTTTGTGTTCTTCGTTTGCATTGAAATGGATCTTTGATCCAATAATGGGAGGAGGAGCCACTGTTCCTTCATGTGGATATGCCCAAGCTTTTGCTCTCGAGTTTATTATTAGCTTCAACCTCATGTTTGTCCTCACCGCCGTTGCTACCGACACTCGAGCTGTGGGAGAGTTGGCGGGAATCGCCGTAGGAGCAACGGTTATGCTCAATGTACTCATCGCCGGACAAACAACTGGAGCTTCAATGAATCCAGTAAGAACACTGGGGCCAGCCATTGCAGCAAACAATTTCAAAGCCATATGGATTTACCTCACAGCTCCCATATTAGGGACATTGTGTGGAGCTGGAATCTACACTGCAGTTAAGTTGCCTGACAAAGATGGTGATTCTCGCTTGCCTTCTACTGCAGCAAGCTTTCGACGATGA 915 47.76 MDTEEAPSTPVTPGTPGAPLFGRVKENQHGSENGKRSLLKSWICFNVDDSWGIEEGGLSKIVSSCSLPYPPVSLARKVGAEFIGTLILIFAGTATAIVNQKTEGTETLIGLAASTGLAVMIVILSTGHISGAHLNPAVTIAFAALKQFPWKHVPLYIGAQMVASLCSSFALKWIFDPIMGGGATVPSCGYAQAFALEFIISFNLMFVLTAVATDTRAVGELAGIAVGATVMLNVLIAGQTTGASMNPVRTLGPAIAANNFKAIWIYLTAPILGTLCGAGIYTAVKLPDKDGDSRLPSTAASFRR 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25155942 25159690 + MELO3C017831.2.1 Cme07g02009 334025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g02009 304 ProSitePatterns MIP family signature. 133 141 IPR022357 -
Cme07g02009 304 PANTHER AQUAPORIN NIP2-1 6 292 IPR034294 -
Cme07g02009 304 PRINTS Major intrinsic protein family signature 76 95 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme07g02009 304 PRINTS Major intrinsic protein family signature 115 139 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme07g02009 304 PRINTS Major intrinsic protein family signature 152 171 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme07g02009 304 PRINTS Major intrinsic protein family signature 196 214 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme07g02009 304 PRINTS Major intrinsic protein family signature 227 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme07g02009 304 PRINTS Major intrinsic protein family signature 264 284 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme07g02009 304 SUPERFAMILY Aquaporin-like 72 289 IPR023271 -
Cme07g02009 304 MobiDBLite consensus disorder prediction 1 32 - -
Cme07g02009 304 Pfam Major intrinsic protein 73 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme07g02009 304 Gene3D Glycerol uptake facilitator protein. 69 293 IPR023271 -
Cme07g02009 304 PANTHER BNAA02G36290D PROTEIN 6 292 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g02009 Cme-Chr7:25155942 Cme09g01912 Cme-Chr9:23251798 3.37E-121 dispersed
Cme07g02009 Cme-Chr7:25155942 Cme08g01268 Cme-Chr8:9177803 7.14E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g02009 K09874 - csv:101207376 580.867