Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g02040 ATGCTTGGTGATCCTAAGGAGGCCAGAGAAGGCATTAAAGAAGTCCATTTCTTGCCCTTCAACCCAGTTGACAAGCGTACAGCTATTACATATATTGACAATGATGGCAACTGGCATCGAGTTAGCAAAGGAGCACCGGAGCAGATTATCGAACTTTGCGACCTCCGAGATGATATCAAGAAGAAGGCTCATTCAATCATCGACAAATTTGCCGATCGTGGTCTTCGTTCACTCGCTGTTTGCCGACAAACCGTTCCAGAGAAAACCAAAGAGAGTGCTGGAGGACCATGGCAATTTGTTGGTCTGTTGCCTCTCTTTGATCCCCCAAGGCATGACAGTGCAGAGACAATTCGAAGGGCACTAAATCTCGGTGTCAACGTTAAGATGATCACTGGTGATCAATTGGCAATTGGAAAAGAAACAGGGCGTAGACTTGGAATGGGCACGAACATGTACCCTTCTTCCTCACTTCTTGGACAAAGCAAGGATGAGTCAATTGCTTCTTTGCCTGTTGATGAGCTCATTGAGAAAGCTGACGGATTTGCAGGAGTCTTCCCTGAACACAAATATGAAATTGTGAGGAGGCTTCAAGAGAGGAAGCATATTTGTGGAATGACAGGAGATGGTGTGAATGATGCTCCAGCTTTGAAGAAAGCAGACATAGGAATTGCAGTTGCTGATGCAACTGATGCTGCAAGAAGCGCTTCTGATATAGTCTTGACAGAGCCAGGATTGAGCGTAATCGTGAGCGCTGTTTTAACAAGCAGAGCCATTTTCCAAAGAATGAAAAACTACACCATTTATGCAGTCTCAATCACCATCCGTATTGTACTTGGATTTTTGCTAATTGCACTCATTTGGAAATTTGACTTCTCCCCTTTCATGGTTTTAATCATAGCCATTCTCAATGATGGTACCATCATGACCATCTCTAAAGATAGGGTAAAACCCTCTCCTCTTCCTGATTCATGGAAGCTACGTGAGATCTTTGCAACTGGCATTGTCTTGGGATCATACTTAGCTGTTATGACCGTTGTTTTCTTCTGGATTGCTAACGCTACTGATTTCTTTACGGACAAATTTGGTGTACATTCTATTAGAGGAAGTGGTGGTGAGCTCACAGCAGCTGTGTATCTTCAAGTCAGTACAGTAAGTCAAGCACTCATCTTTGTGACAAGATCTCGAAGCTGGTCGTTTATCGAACGCCCTGGTCTGCTCTTAGTGTTCGCTTTCTTTGTAGCACAACTGGTGGCTACCTTGATTGCTGTGTACGCCAACTGGGGCTTCGCTGATATGAAAGGAATTGGGTGGGGATGGGCAGGAGTTATCTGGATTTACAGCGTAGTCTTCTACATTCCTCTTGACGTTCTCAAGTTTGCCACTAGATATGCTTTGAGTGGCAAGGCTTGGAATAACATGATCCAAAATAGGACTGCTTTCACATCAAAGAAGGATTATGGCATTGGCGAGAGGGAGGCTCAATGGGCTGCAGCTCAACGTACCCTCCATGGCCTACAGCCTCCTGAAACATCTGACCTCTTCAATGACAAAACCAACTACAGGGAGCTGTCCGAAATCGCCGAGCAAGCCAAGAAGCGTGCTGAAGTCGCCAGGTTGAGGGAGCTTCATACATTGAAAGGACATGTTGAATCAGTGGTGAAACTAAAGGGATTGGATATTGAAACTATACAACAACACTACACTGTTTGA 1710 44.8 MLGDPKEAREGIKEVHFLPFNPVDKRTAITYIDNDGNWHRVSKGAPEQIIELCDLRDDIKKKAHSIIDKFADRGLRSLAVCRQTVPEKTKESAGGPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSKDESIASLPVDELIEKADGFAGVFPEHKYEIVRRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFLLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLREIFATGIVLGSYLAVMTVVFFWIANATDFFTDKFGVHSIRGSGGELTAAVYLQVSTVSQALIFVTRSRSWSFIERPGLLLVFAFFVAQLVATLIAVYANWGFADMKGIGWGWAGVIWIYSVVFYIPLDVLKFATRYALSGKAWNNMIQNRTAFTSKKDYGIGEREAQWAAAQRTLHGLQPPETSDLFNDKTNYRELSEIAEQAKKRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25358546 25362818 - MELO3C017859.2.1 Cme07g02040 334056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g02040 569 PANTHER ATPASE 9, PLASMA MEMBRANE-TYPE 1 547 - -
Cme07g02040 569 Coils Coil 520 540 - -
Cme07g02040 569 SUPERFAMILY HAD-like 98 252 IPR036412 -
Cme07g02040 569 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 181 295 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme07g02040 569 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 3 112 IPR023299 GO:0000166
Cme07g02040 569 Gene3D - 1 106 IPR023299 GO:0000166
Cme07g02040 569 PANTHER CALCIUM-TRANSPORTING ATPASE 1 547 - -
Cme07g02040 569 Gene3D - 518 569 - -
Cme07g02040 569 SUPERFAMILY Calcium ATPase, transmembrane domain M 255 465 IPR023298 -
Cme07g02040 569 Pfam haloacid dehalogenase-like hydrolase 36 220 - -
Cme07g02040 569 PRINTS H+-transporting ATPase (proton pump) signature 178 194 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme07g02040 569 PRINTS H+-transporting ATPase (proton pump) signature 206 222 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme07g02040 569 PRINTS H+-transporting ATPase (proton pump) signature 378 399 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme07g02040 569 PRINTS H+-transporting ATPase (proton pump) signature 63 81 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme07g02040 569 PRINTS H+-transporting ATPase (proton pump) signature 237 262 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme07g02040 569 PRINTS P-type cation-transporting ATPase superfamily signature 206 225 - -
Cme07g02040 569 PRINTS P-type cation-transporting ATPase superfamily signature 229 241 - -
Cme07g02040 569 PRINTS P-type cation-transporting ATPase superfamily signature 123 133 - -
Cme07g02040 569 PRINTS P-type cation-transporting ATPase superfamily signature 101 112 - -
Cme07g02040 569 Gene3D - 207 464 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g02040 Cme-Chr7:25358546 Cme12g01744 Cme-Chr12:24163351 0 dispersed
Cme07g02040 Cme-Chr7:25358546 Cme03g01691 Cme-Chr3:25617688 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g02040 K01535 - csv:101212751 1082.01