Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme07g02041 | ATGGGAAGACCTCAACAACGCTATAGAGGAGTCCGTCAAAGGCATTGGGGCTCTTGGGTCTCTGAGATTCGTCATCCTATACTGAAGACAAGGATATGGCTGGGAACTTTCGAAACGGCCGAAGACGCCGCCAGAGCATACGACGAAGCAGCTACGATTATGTGTTGTACTCCCAACAATCTCTCCACCAATCATAGCGCACCACATCATCCCTCGCCGGCATCGCCCTCGTCCAAGCTTCTAACTCCGACATTGATCGAGAAGTTGCAAAGATGTCGAATGGCTTCCCTCCAAATGACCAAAGCCCAATTCGCCGTCCGGAAATCCGCCGACCCAACTCAAAGTCCGGCCACCAAACTCGAGGGAGGTCACTGGCCGGAGAAAGAGGCCAGATGGGTCTCCAGCCGGGAGGTTGAGGAGGTCCGCCGGCTTGAAGATGACCACGTGGAGCAAATGATTCAAGAGTTGCTTGATCTTGGGTCCTTTGAGTTTTGCCCTAATAATAATAATTAA | 513 | 52.05 | MGRPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAATIMCCTPNNLSTNHSAPHHPSPASPSSKLLTPTLIEKLQRCRMASLQMTKAQFAVRKSADPTQSPATKLEGGHWPEKEARWVSSREVEEVRRLEDDHVEQMIQELLDLGSFEFCPNNNN | 170 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 25368178 | 25369122 | - | MELO3C017860.2.1 | Cme07g02041 | 334057 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme07g02041 | 170 | Pfam | AP2 domain | 7 | 51 | IPR001471 | GO:0003700|GO:0006355 | |
| Cme07g02041 | 170 | PANTHER | ETHYLENE RESPONSE FACTOR | 1 | 166 | - | - | |
| Cme07g02041 | 170 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 51 | IPR001471 | GO:0003700|GO:0006355 | |
| Cme07g02041 | 170 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 1 | 166 | - | - | |
| Cme07g02041 | 170 | CDD | AP2 | 6 | 55 | IPR001471 | GO:0003700|GO:0006355 | |
| Cme07g02041 | 170 | Gene3D | AP2/ERF domain | 6 | 66 | IPR036955 | GO:0003700|GO:0006355 | |
| Cme07g02041 | 170 | SMART | rav1_2 | 7 | 70 | IPR001471 | GO:0003700|GO:0006355 | |
| Cme07g02041 | 170 | PRINTS | Ethylene responsive element binding protein signature | 8 | 19 | IPR001471 | GO:0003700|GO:0006355 | |
| Cme07g02041 | 170 | PRINTS | Ethylene responsive element binding protein signature | 30 | 46 | IPR001471 | GO:0003700|GO:0006355 | |
| Cme07g02041 | 170 | SUPERFAMILY | DNA-binding domain | 7 | 55 | IPR016177 | GO:0003677 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cme01g02563 | Cme07g02041 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme03g01588 | Cme-Chr3:24896021 | Cme07g02041 | Cme-Chr7:25368178 | 1.27E-48 | dispersed | |
| Cme07g02041 | Cme-Chr7:25368178 | Cme07g02066 | Cme-Chr7:25529775 | 2.13E-27 | dispersed | |
| Cme07g02041 | Cme-Chr7:25368178 | Cme07g00103 | Cme-Chr7:640263 | 2.47E-46 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 41705 | PF00847 | AP2 | 2.10E-11 | CL0081 | Cme | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme07g02041 | - | - | csv:101207788 | 288.115 |